RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 HOXA5P20719 270 aa10.06□□□□□ -0.8
CLSTN3-207ENST00000537408 TBXA2RP21731 343 aa10.06□□□□□ -0.8
CLSTN3-207ENST00000537408 GIPRP48546 466 aa10.06□□□□□ -0.8
CLSTN3-207ENST00000537408 GFOD2Q3B7J2 385 aa10.06□□□□□ -0.8
CLSTN3-207ENST00000537408 HIST2H3PS2Q5TEC6 136 aa10.06□□□□□ -0.8
CLSTN3-207ENST00000537408 SPNS3Q6ZMD2 512 aa10.06□□□□□ -0.8
CLSTN3-207ENST00000537408 ZNF227Q86WZ6 799 aa10.06□□□□□ -0.8
CLSTN3-207ENST00000537408 LRRC56Q8IYG6 542 aaPredicted RBP10.06□□□□□ -0.8
CLSTN3-207ENST00000537408 OR4K2Q8NGD2 314 aa10.06□□□□□ -0.8
CLSTN3-207ENST00000537408 OR56B1Q8NGI3 324 aa10.06□□□□□ -0.8
CLSTN3-207ENST00000537408 OR52B4Q8NGK2 314 aa10.06□□□□□ -0.8
CLSTN3-207ENST00000537408 OR14C36Q8NHC7 312 aa10.06□□□□□ -0.8
CLSTN3-207ENST00000537408 SLC7A13Q8TCU3 470 aa10.06□□□□□ -0.8
CLSTN3-207ENST00000537408 CXorf40AQ8TE69 158 aa10.06□□□□□ -0.8
CLSTN3-207ENST00000537408 SLC25A28Q96A46 364 aa10.06□□□□□ -0.8
CLSTN3-207ENST00000537408 ZNF75AQ96N20 296 aa10.06□□□□□ -0.8
CLSTN3-207ENST00000537408 CCNL2Q96S94 520 aaPredicted RBP10.06□□□□□ -0.8
CLSTN3-207ENST00000537408 FAM117AQ9C073 453 aa10.06□□□□□ -0.8
CLSTN3-207ENST00000537408 PLEKHA1Q9HB21 404 aa10.06□□□□□ -0.8
CLSTN3-207ENST00000537408 GDF2Q9UK05 429 aaPredicted RBP10.06□□□□□ -0.8
CLSTN3-207ENST00000537408 A6NLC8 198 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 SEC14L6B5MCN3 397 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 UGDHO60701 494 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 SH3BGRLO75368 114 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 SNRNP70P08621 437 aaKnown RBP10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 SNRPBP14678 240 aaKnown RBP10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 DGKAP23743 735 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 RAC1P63000 192 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 ZXDBP98169 803 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 SSPNQ14714 243 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 TAF13Q15543 124 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 OLFML2AQ68BL7 652 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 LRRTM1Q86UE6 522 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 ST7LQ8TDW4 575 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 NOL4LQ96MY1 436 aaPredicted RBP10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 RGCCQ9H4X1 137 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 CRLF2Q9HC73 371 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 CALML5Q9NZT1 146 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 RCC2Q9P258 522 aaKnown RBP10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 UPB1Q9UBR1 384 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 TET1Q8NFU7 2136 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 PARP14Q460N5 1801 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 OR2W5A6NFC9 320 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 EIF4E2O60573 245 aaKnown RBP10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 DCNP07585 359 aaKnown RBP10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 ALPPL2P10696 532 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 C6P13671 934 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 CTHP32929 405 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 GDF5P43026 501 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 OR10A3P58181 314 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 TNFRSF9Q07011 255 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 ACSM2AQ08AH3 577 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 SURF2Q15527 256 aaPredicted RBP10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 ACSM2BQ68CK6 577 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 ACOT7LQ6ZUV0 252 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 COMTD1Q86VU5 262 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 NCOR1P1Q9H4R4 102 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 MEPEQ9NQ76 525 aaPredicted RBP10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 MBD1Q9UIS9 605 aaPredicted RBP10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 TYRP1P17643 537 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 ACVRL1P37023 503 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 IFNGR2P38484 337 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 SLC10A7Q0GE19 358 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 LPAL2Q16609 132 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 PLEKHN1Q494U1 663 aaPredicted RBP10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 FIGNL1Q6PIW4 674 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 MBOAT1Q6ZNC8 495 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 THAP4Q8WY91 577 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 SMAD5Q99717 465 aaKnown RBP10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 CDV3Q9UKY7 258 aaKnown RBP10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 GON4LQ3T8J9 2241 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 TRIP11Q15643 1979 aa10.05□□□□□ -0.8
CLSTN3-207ENST00000537408 GFYI3L273 518 aa10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 F10P00742 488 aa10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 THBS1P07996 1170 aa10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 UCHL1P09936 223 aa10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 PRSS56P0CW18 603 aa10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 MC4RP32245 332 aa10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 ARRB1P49407 418 aaPredicted RBP10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 H2BFSP57053 126 aa10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 SLC7A9P82251 487 aa10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 MRPL58Q14197 206 aaKnown RBP10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 ZNF770Q6IQ21 691 aaPredicted RBP10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 VRK3Q8IV63 474 aa10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 OR9A2Q8NGT5 310 aa10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 TERB2Q8NHR7 220 aa10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 MVB12BQ9H7P6 319 aa10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 OARD1Q9Y530 152 aa10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 SHROOM3Q8TF72 1996 aa10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 TCRBV21S2A2A0A5A6 115 aa10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 PPP1R2P9O14990 202 aa10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 INSIG1O15503 277 aa10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 PPIHO43447 177 aaKnown RBP10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 CYTIPO60759 359 aa10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 YIF1AO95070 293 aa10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 ELAVL4P26378 380 aaKnown RBP10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 THBS2P35442 1172 aa10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 OMPP47874 163 aa10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 TAS2R43P59537 309 aa10.04□□□□□ -0.8
CLSTN3-207ENST00000537408 ZNF322Q6U7Q0 402 aaPredicted RBP10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms