RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 POLR2J2Q9GZM3 115 aaKnown RBP17.59■□□□□ 0.41
CPSF1-209ENST00000532725 POLR2J3Q9H1A7 115 aaKnown RBP17.59■□□□□ 0.41
CPSF1-209ENST00000532725 FANCFQ9NPI8 374 aa17.59■□□□□ 0.41
CPSF1-209ENST00000532725 NDE1Q9NXR1 346 aa17.59■□□□□ 0.41
CPSF1-209ENST00000532725 SEC14L4Q9UDX3 406 aa17.59■□□□□ 0.41
CPSF1-209ENST00000532725 EGFL7Q9UHF1 273 aa17.59■□□□□ 0.41
CPSF1-209ENST00000532725 RIMS3Q9UJD0 308 aa17.59■□□□□ 0.41
CPSF1-209ENST00000532725 GPR52Q9Y2T5 361 aa17.59■□□□□ 0.41
CPSF1-209ENST00000532725 ABCA4P78363 2273 aa17.58■□□□□ 0.4
CPSF1-209ENST00000532725 MRPL33O75394 65 aaKnown RBP17.58■□□□□ 0.4
CPSF1-209ENST00000532725 CTAG2O75638 210 aa17.58■□□□□ 0.4
CPSF1-209ENST00000532725 CNOT4O95628 575 aaKnown RBP17.58■□□□□ 0.4
CPSF1-209ENST00000532725 ADAP00813 363 aa17.58■□□□□ 0.4
CPSF1-209ENST00000532725 SERPINA1P01009 418 aa17.58■□□□□ 0.4
CPSF1-209ENST00000532725 PSMB1P20618 241 aaKnown RBP17.58■□□□□ 0.4
CPSF1-209ENST00000532725 P2RY6Q15077 328 aa17.58■□□□□ 0.4
CPSF1-209ENST00000532725 SAMD4BQ5PRF9 694 aaKnown RBP17.58■□□□□ 0.4
CPSF1-209ENST00000532725 ANKRD34AQ69YU3 496 aa17.58■□□□□ 0.4
CPSF1-209ENST00000532725 C16orf89Q6UX73 402 aa17.58■□□□□ 0.4
CPSF1-209ENST00000532725 DEF8Q6ZN54 512 aa17.58■□□□□ 0.4
CPSF1-209ENST00000532725 Q6ZT83 130 aa17.58■□□□□ 0.4
CPSF1-209ENST00000532725 H1FNTQ75WM6 255 aaPredicted RBP17.58■□□□□ 0.4
CPSF1-209ENST00000532725 ZC3HAV1Q7Z2W4 902 aaKnown RBP17.58■□□□□ 0.4
CPSF1-209ENST00000532725 CXorf67Q86X51 503 aaPredicted RBP17.58■□□□□ 0.4
CPSF1-209ENST00000532725 HDHD5Q9BXW7 423 aa17.58■□□□□ 0.4
CPSF1-209ENST00000532725 AMBRA1Q9C0C7 1298 aa17.58■□□□□ 0.4
CPSF1-209ENST00000532725 PARPBPQ9NWS1 579 aa17.58■□□□□ 0.4
CPSF1-209ENST00000532725 RASD1Q9Y272 281 aa17.58■□□□□ 0.4
CPSF1-209ENST00000532725 B3GALT5Q9Y2C3 310 aa17.58■□□□□ 0.4
CPSF1-209ENST00000532725 TESMINQ9Y4I5 508 aa17.58■□□□□ 0.4
CPSF1-209ENST00000532725 A6NNC1 897 aa17.57■□□□□ 0.4
CPSF1-209ENST00000532725 OR5F1O95221 314 aa17.57■□□□□ 0.4
CPSF1-209ENST00000532725 ZNF682O95780 498 aa17.57■□□□□ 0.4
CPSF1-209ENST00000532725 PTNP21246 168 aa17.57■□□□□ 0.4
CPSF1-209ENST00000532725 GRPRP30550 384 aa17.57■□□□□ 0.4
CPSF1-209ENST00000532725 TAS2R41P59536 307 aa17.57■□□□□ 0.4
CPSF1-209ENST00000532725 MFSD13AQ14CX5 517 aa17.57■□□□□ 0.4
CPSF1-209ENST00000532725 POU4F3Q15319 338 aa17.57■□□□□ 0.4
CPSF1-209ENST00000532725 SPATS1Q496A3 300 aa17.57■□□□□ 0.4
CPSF1-209ENST00000532725 SFRP5Q5T4F7 317 aa17.57■□□□□ 0.4
CPSF1-209ENST00000532725 TTC33Q6PID6 262 aaPredicted RBP17.57■□□□□ 0.4
CPSF1-209ENST00000532725 CREB3L2Q70SY1 520 aa17.57■□□□□ 0.4
CPSF1-209ENST00000532725 GPAT4Q86UL3 456 aa17.57■□□□□ 0.4
CPSF1-209ENST00000532725 EPHX4Q8IUS5 362 aa17.57■□□□□ 0.4
CPSF1-209ENST00000532725 KDM8Q8N371 416 aa17.57■□□□□ 0.4
CPSF1-209ENST00000532725 FAM162AQ96A26 154 aa17.57■□□□□ 0.4
CPSF1-209ENST00000532725 TMEM45BQ96B21 275 aa17.57■□□□□ 0.4
CPSF1-209ENST00000532725 APH1AQ96BI3 265 aa17.57■□□□□ 0.4
CPSF1-209ENST00000532725 MOGAT1Q96PD6 335 aa17.57■□□□□ 0.4
CPSF1-209ENST00000532725 ZNF385AQ96PM9 386 aaKnown RBP17.57■□□□□ 0.4
CPSF1-209ENST00000532725 OR10A4Q9H209 315 aa17.57■□□□□ 0.4
CPSF1-209ENST00000532725 GORASP2Q9H8Y8 452 aa17.57■□□□□ 0.4
CPSF1-209ENST00000532725 DCAF13Q9NV06 445 aaKnown RBP17.57■□□□□ 0.4
CPSF1-209ENST00000532725 A4GNTQ9UNA3 340 aa17.57■□□□□ 0.4
CPSF1-209ENST00000532725 SNX13Q9Y5W8 968 aa17.57■□□□□ 0.4
CPSF1-209ENST00000532725 TEX15Q9BXT5 2789 aa17.57■□□□□ 0.4
CPSF1-209ENST00000532725 LOC102725191A0A1B0GVB3 256 aa17.56■□□□□ 0.4
CPSF1-209ENST00000532725 MS4A18H0YCH9 400 aa17.56■□□□□ 0.4
CPSF1-209ENST00000532725 M0R082 166 aa17.56■□□□□ 0.4
CPSF1-209ENST00000532725 THRBP10828 461 aa17.56■□□□□ 0.4
CPSF1-209ENST00000532725 TCN1P20061 433 aaPredicted RBP17.56■□□□□ 0.4
CPSF1-209ENST00000532725 CALB2P22676 271 aa17.56■□□□□ 0.4
CPSF1-209ENST00000532725 CBLP22681 906 aa17.56■□□□□ 0.4
CPSF1-209ENST00000532725 MSX2P35548 267 aaPredicted RBP17.56■□□□□ 0.4
CPSF1-209ENST00000532725 MXRA7P84157 204 aa17.56■□□□□ 0.4
CPSF1-209ENST00000532725 ITGADQ13349 1161 aa17.56■□□□□ 0.4
CPSF1-209ENST00000532725 MS4A18Q3C1V0 323 aa17.56■□□□□ 0.4
CPSF1-209ENST00000532725 FBXW9Q5XUX1 488 aa17.56■□□□□ 0.4
CPSF1-209ENST00000532725 NKAIN4Q8IVV8 208 aa17.56■□□□□ 0.4
CPSF1-209ENST00000532725 RBM15BQ8NDT2 890 aaKnown RBP17.56■□□□□ 0.4
CPSF1-209ENST00000532725 ZNF417Q8TAU3 575 aa17.56■□□□□ 0.4
CPSF1-209ENST00000532725 HSH2DQ96JZ2 352 aa17.56■□□□□ 0.4
CPSF1-209ENST00000532725 OXGR1Q96P68 337 aa17.56■□□□□ 0.4
CPSF1-209ENST00000532725 ZNF587Q96SQ5 575 aaPredicted RBP17.56■□□□□ 0.4
CPSF1-209ENST00000532725 SLC19A3Q9BZV2 496 aa17.56■□□□□ 0.4
CPSF1-209ENST00000532725 B3GAT1Q9P2W7 334 aa17.56■□□□□ 0.4
CPSF1-209ENST00000532725 RPS6KA6Q9UK32 745 aa17.56■□□□□ 0.4
CPSF1-209ENST00000532725 CORINQ9Y5Q5 1042 aa17.56■□□□□ 0.4
CPSF1-209ENST00000532725 SPG11Q96JI7 2443 aa17.56■□□□□ 0.4
CPSF1-209ENST00000532725 LRBAP50851 2863 aa17.55■□□□□ 0.4
CPSF1-209ENST00000532725 LRRN3E7EW58 273 aa17.55■□□□□ 0.4
CPSF1-209ENST00000532725 CASKO14936 926 aa17.55■□□□□ 0.4
CPSF1-209ENST00000532725 MT-ATP6P00846 226 aa17.55■□□□□ 0.4
CPSF1-209ENST00000532725 IGHV3-9P01782 118 aa17.55■□□□□ 0.4
CPSF1-209ENST00000532725 THBDP07204 575 aa17.55■□□□□ 0.4
CPSF1-209ENST00000532725 PPP3CBP16298 524 aa17.55■□□□□ 0.4
CPSF1-209ENST00000532725 FUT4P22083 530 aa17.55■□□□□ 0.4
CPSF1-209ENST00000532725 GTF2E2P29084 291 aaKnown RBP17.55■□□□□ 0.4
CPSF1-209ENST00000532725 TSC22D1Q15714 1073 aa17.55■□□□□ 0.4
CPSF1-209ENST00000532725 IFI44LQ53G44 452 aa17.55■□□□□ 0.4
CPSF1-209ENST00000532725 NHLRC1Q6VVB1 395 aa17.55■□□□□ 0.4
CPSF1-209ENST00000532725 RINLQ6ZS11 566 aa17.55■□□□□ 0.4
CPSF1-209ENST00000532725 FKBP9P1Q75LS8 142 aa17.55■□□□□ 0.4
CPSF1-209ENST00000532725 TRPM8Q7Z2W7 1104 aa17.55■□□□□ 0.4
CPSF1-209ENST00000532725 TSEN54Q7Z6J9 526 aaKnown RBP17.55■□□□□ 0.4
CPSF1-209ENST00000532725 SCAIQ8N9R8 606 aa17.55■□□□□ 0.4
CPSF1-209ENST00000532725 ADPRHL1Q8NDY3 354 aa17.55■□□□□ 0.4
CPSF1-209ENST00000532725 GEMIN6Q8WXD5 167 aaKnown RBP17.55■□□□□ 0.4
CPSF1-209ENST00000532725 MED18Q9BUE0 208 aa17.55■□□□□ 0.4
CPSF1-209ENST00000532725 MEPEQ9NQ76 525 aaPredicted RBP17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms