RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 KDM4EB2RXH2 506 aaPredicted RBP19.14■□□□□ 0.66
VPS28-212ENST00000530836 ARPC3O15145 178 aa19.14■□□□□ 0.66
VPS28-212ENST00000530836 BGLAPP02818 100 aa19.14■□□□□ 0.66
VPS28-212ENST00000530836 CDK1P06493 297 aa19.14■□□□□ 0.66
VPS28-212ENST00000530836 HTR1AP08908 422 aa19.14■□□□□ 0.66
VPS28-212ENST00000530836 APEHP13798 732 aaKnown RBP19.14■□□□□ 0.66
VPS28-212ENST00000530836 HK1P19367 917 aa19.14■□□□□ 0.66
VPS28-212ENST00000530836 SLC15A1P46059 708 aa19.14■□□□□ 0.66
VPS28-212ENST00000530836 GTF2A1P52655 376 aaPredicted RBP19.14■□□□□ 0.66
VPS28-212ENST00000530836 NUDT6P53370 316 aa19.14■□□□□ 0.66
VPS28-212ENST00000530836 NADK2Q4G0N4 442 aa19.14■□□□□ 0.66
VPS28-212ENST00000530836 MDGA2Q7Z553 956 aa19.14■□□□□ 0.66
VPS28-212ENST00000530836 NANOGNBQ7Z5D8 188 aa19.14■□□□□ 0.66
VPS28-212ENST00000530836 ANKK1Q8NFD2 765 aa19.14■□□□□ 0.66
VPS28-212ENST00000530836 SLC25A43Q8WUT9 341 aaPredicted RBP19.14■□□□□ 0.66
VPS28-212ENST00000530836 ZNF582Q96NG8 517 aaPredicted RBP19.14■□□□□ 0.66
VPS28-212ENST00000530836 MOGAT1Q96PD6 335 aa19.14■□□□□ 0.66
VPS28-212ENST00000530836 SIGLEC11Q96RL6 698 aa19.14■□□□□ 0.66
VPS28-212ENST00000530836 ENKD1Q9H0I2 346 aa19.14■□□□□ 0.66
VPS28-212ENST00000530836 DNAJC27Q9NZQ0 273 aa19.14■□□□□ 0.66
VPS28-212ENST00000530836 ERVK-18Q9QC07 812 aa19.14■□□□□ 0.66
VPS28-212ENST00000530836 LRRN3E7EW58 273 aa19.14■□□□□ 0.65
VPS28-212ENST00000530836 K7EM74 188 aa19.14■□□□□ 0.65
VPS28-212ENST00000530836 TRIM3O75382 744 aaPredicted RBP19.14■□□□□ 0.65
VPS28-212ENST00000530836 RPL4P36578 427 aaKnown RBP19.14■□□□□ 0.65
VPS28-212ENST00000530836 CLK1P49759 484 aaKnown RBP19.14■□□□□ 0.65
VPS28-212ENST00000530836 NXNL2Q5VZ03 156 aa19.14■□□□□ 0.65
VPS28-212ENST00000530836 C3orf33Q6P1S2 294 aa19.14■□□□□ 0.65
VPS28-212ENST00000530836 SATL1Q86VE3 508 aa19.14■□□□□ 0.65
VPS28-212ENST00000530836 GID4Q8IVV7 300 aa19.14■□□□□ 0.65
VPS28-212ENST00000530836 STX19Q8N4C7 294 aa19.14■□□□□ 0.65
VPS28-212ENST00000530836 LSM14AQ8ND56 463 aaKnown RBP19.14■□□□□ 0.65
VPS28-212ENST00000530836 C9orf43Q8TAL5 461 aaPredicted RBP19.14■□□□□ 0.65
VPS28-212ENST00000530836 PTDSS2Q9BVG9 487 aa19.14■□□□□ 0.65
VPS28-212ENST00000530836 AMBNQ9NP70 447 aa19.14■□□□□ 0.65
VPS28-212ENST00000530836 NRIP3Q9NQ35 241 aa19.14■□□□□ 0.65
VPS28-212ENST00000530836 H2AFY2Q9P0M6 372 aaPredicted RBP19.14■□□□□ 0.65
VPS28-212ENST00000530836 LRFN1Q9P244 771 aa19.14■□□□□ 0.65
VPS28-212ENST00000530836 KLHL21Q9UJP4 597 aa19.14■□□□□ 0.65
VPS28-212ENST00000530836 CORINQ9Y5Q5 1042 aa19.14■□□□□ 0.65
VPS28-212ENST00000530836 ZFYVE26Q68DK2 2539 aa19.13■□□□□ 0.65
VPS28-212ENST00000530836 IMPA2O14732 288 aa19.13■□□□□ 0.65
VPS28-212ENST00000530836 ATXN7O15265 892 aaPredicted RBP19.13■□□□□ 0.65
VPS28-212ENST00000530836 PDGFAP04085 211 aa19.13■□□□□ 0.65
VPS28-212ENST00000530836 ZNF3P17036 446 aa19.13■□□□□ 0.65
VPS28-212ENST00000530836 CNR1P21554 472 aa19.13■□□□□ 0.65
VPS28-212ENST00000530836 UQCRC1P31930 480 aa19.13■□□□□ 0.65
VPS28-212ENST00000530836 LTBQ06643 244 aa19.13■□□□□ 0.65
VPS28-212ENST00000530836 LY6DQ14210 128 aa19.13■□□□□ 0.65
VPS28-212ENST00000530836 GLYR1Q49A26 553 aaPredicted RBP19.13■□□□□ 0.65
VPS28-212ENST00000530836 KLHL22Q53GT1 634 aa19.13■□□□□ 0.65
VPS28-212ENST00000530836 AADACL4Q5VUY2 407 aa19.13■□□□□ 0.65
VPS28-212ENST00000530836 MFSD8Q8NHS3 518 aa19.13■□□□□ 0.65
VPS28-212ENST00000530836 ASPNQ9BXN1 380 aa19.13■□□□□ 0.65
VPS28-212ENST00000530836 ANKRD10Q9NXR5 420 aa19.13■□□□□ 0.65
VPS28-212ENST00000530836 TP53TG5Q9Y2B4 290 aa19.13■□□□□ 0.65
VPS28-212ENST00000530836 GPR52Q9Y2T5 361 aa19.13■□□□□ 0.65
VPS28-212ENST00000530836 HRH3Q9Y5N1 445 aa19.13■□□□□ 0.65
VPS28-212ENST00000530836 IGSF10Q6WRI0 2623 aa19.12■□□□□ 0.65
VPS28-212ENST00000530836 BLOC1S5-TXNDC5H3BN57 136 aa19.12■□□□□ 0.65
VPS28-212ENST00000530836 PPP1R3DO95685 299 aa19.12■□□□□ 0.65
VPS28-212ENST00000530836 DBTP11182 482 aaKnown RBP19.12■□□□□ 0.65
VPS28-212ENST00000530836 PAICSP22234 425 aaKnown RBP19.12■□□□□ 0.65
VPS28-212ENST00000530836 DPP4P27487 766 aa19.12■□□□□ 0.65
VPS28-212ENST00000530836 ZNF91Q05481 1191 aa19.12■□□□□ 0.65
VPS28-212ENST00000530836 ST3GAL4Q11206 333 aa19.12■□□□□ 0.65
VPS28-212ENST00000530836 SELENBP1Q13228 472 aa19.12■□□□□ 0.65
VPS28-212ENST00000530836 MFAP5Q13361 173 aa19.12■□□□□ 0.65
VPS28-212ENST00000530836 TUBA3CQ13748 450 aa19.12■□□□□ 0.65
VPS28-212ENST00000530836 INPP5JQ15735 1006 aaPredicted RBP19.12■□□□□ 0.65
VPS28-212ENST00000530836 SGCBQ16585 318 aa19.12■□□□□ 0.65
VPS28-212ENST00000530836 ALG10Q5BKT4 473 aa19.12■□□□□ 0.65
VPS28-212ENST00000530836 TUBA3EQ6PEY2 450 aa19.12■□□□□ 0.65
VPS28-212ENST00000530836 IGFL2Q6UWQ7 119 aa19.12■□□□□ 0.65
VPS28-212ENST00000530836 GPR141Q7Z602 305 aa19.12■□□□□ 0.65
VPS28-212ENST00000530836 GTPBP8Q8N3Z3 284 aaPredicted RBP19.12■□□□□ 0.65
VPS28-212ENST00000530836 OR5J2Q8NH18 312 aa19.12■□□□□ 0.65
VPS28-212ENST00000530836 POC1BQ8TC44 478 aa19.12■□□□□ 0.65
VPS28-212ENST00000530836 SGCDQ92629 289 aa19.12■□□□□ 0.65
VPS28-212ENST00000530836 FCGR1BQ92637 280 aa19.12■□□□□ 0.65
VPS28-212ENST00000530836 ERMAPQ96PL5 475 aaPredicted RBP19.12■□□□□ 0.65
VPS28-212ENST00000530836 SLC25A18Q9H1K4 315 aa19.12■□□□□ 0.65
VPS28-212ENST00000530836 ZNF71Q9NQZ8 489 aaPredicted RBP19.12■□□□□ 0.65
VPS28-212ENST00000530836 MRPS18AQ9NVS2 196 aaKnown RBP19.12■□□□□ 0.65
VPS28-212ENST00000530836 ZC3H12DA2A288 527 aaKnown RBP19.11■□□□□ 0.65
VPS28-212ENST00000530836 ZNF17P17021 662 aa19.11■□□□□ 0.65
VPS28-212ENST00000530836 CD96P40200 585 aa19.11■□□□□ 0.65
VPS28-212ENST00000530836 ST13P50502 369 aaKnown RBP19.11■□□□□ 0.65
VPS28-212ENST00000530836 EMX1Q04741 257 aaPredicted RBP19.11■□□□□ 0.65
VPS28-212ENST00000530836 TMED1Q13445 227 aa19.11■□□□□ 0.65
VPS28-212ENST00000530836 EMC4Q5J8M3 183 aa19.11■□□□□ 0.65
VPS28-212ENST00000530836 XAF1Q6GPH4 301 aa19.11■□□□□ 0.65
VPS28-212ENST00000530836 IGFL3Q6UXB1 125 aa19.11■□□□□ 0.65
VPS28-212ENST00000530836 LINC00696Q6ZRV3 163 aa19.11■□□□□ 0.65
VPS28-212ENST00000530836 ASB18Q6ZVZ8 466 aa19.11■□□□□ 0.65
VPS28-212ENST00000530836 CXXC5Q7LFL8 322 aaKnown RBP19.11■□□□□ 0.65
VPS28-212ENST00000530836 CDCA4Q9BXL8 241 aa19.11■□□□□ 0.65
VPS28-212ENST00000530836 MRPL39Q9NYK5 338 aaKnown RBP19.11■□□□□ 0.65
VPS28-212ENST00000530836 BOD1L1Q8NFC6 3051 aa19.11■□□□□ 0.65
VPS28-212ENST00000530836 MCIDASD6RGH6 385 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms