RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	CANT1	Q8WVQ1	401 aa		18.5	■□□□□ 0.55
CD44-222	ENST00000526025	PIGM	Q9H3S5	423 aa		18.5	■□□□□ 0.55
CD44-222	ENST00000526025	YY1AP1	Q9H869	796 aa		18.5	■□□□□ 0.55
CD44-222	ENST00000526025	EMC3	Q9P0I2	261 aa		18.5	■□□□□ 0.55
CD44-222	ENST00000526025	RHCG	Q9UBD6	479 aa		18.5	■□□□□ 0.55
CD44-222	ENST00000526025	ZNF229	Q9UJW7	825 aa		18.5	■□□□□ 0.55
CD44-222	ENST00000526025	ING1	Q9UK53	422 aa	Predicted RBP	18.5	■□□□□ 0.55
CD44-222	ENST00000526025	RASD1	Q9Y272	281 aa		18.5	■□□□□ 0.55
CD44-222	ENST00000526025	SPTAN1	Q13813	2472 aa	Known RBP	18.5	■□□□□ 0.55
CD44-222	ENST00000526025	IGHV3-15	A0A0B4J1V0	119 aa		18.49	■□□□□ 0.55
CD44-222	ENST00000526025	LOC102725191	A0A1B0GVB3	256 aa		18.49	■□□□□ 0.55
CD44-222	ENST00000526025	ZNF716	A6NP11	495 aa		18.49	■□□□□ 0.55
CD44-222	ENST00000526025	ZNF814	B7Z6K7	855 aa		18.49	■□□□□ 0.55
CD44-222	ENST00000526025	GPR171	O14626	319 aa		18.49	■□□□□ 0.55
CD44-222	ENST00000526025	AKR7A3	O95154	331 aa		18.49	■□□□□ 0.55
CD44-222	ENST00000526025	CLDN14	O95500	239 aa		18.49	■□□□□ 0.55
CD44-222	ENST00000526025	YES1	P07947	543 aa		18.49	■□□□□ 0.55
CD44-222	ENST00000526025	KIR2DL2	P43627	348 aa	Predicted RBP	18.49	■□□□□ 0.55
CD44-222	ENST00000526025	LTB	Q06643	244 aa		18.49	■□□□□ 0.55
CD44-222	ENST00000526025	FOXF2	Q12947	444 aa		18.49	■□□□□ 0.55
CD44-222	ENST00000526025	MBOAT2	Q6ZWT7	520 aa		18.49	■□□□□ 0.55
CD44-222	ENST00000526025	H1FNT	Q75WM6	255 aa	Predicted RBP	18.49	■□□□□ 0.55
CD44-222	ENST00000526025	GCNT2	Q8N0V5	402 aa		18.49	■□□□□ 0.55
CD44-222	ENST00000526025	TMEM99	Q8N816	258 aa		18.49	■□□□□ 0.55
CD44-222	ENST00000526025	OR6K3	Q8NGY3	331 aa		18.49	■□□□□ 0.55
CD44-222	ENST00000526025	SLC25A36	Q96CQ1	311 aa		18.49	■□□□□ 0.55
CD44-222	ENST00000526025	DNAJA3	Q96EY1	480 aa		18.49	■□□□□ 0.55
CD44-222	ENST00000526025	RAB3IP	Q96QF0	476 aa	Predicted RBP	18.49	■□□□□ 0.55
CD44-222	ENST00000526025	FUZ	Q9BT04	418 aa		18.49	■□□□□ 0.55
CD44-222	ENST00000526025	ASPN	Q9BXN1	380 aa		18.49	■□□□□ 0.55
CD44-222	ENST00000526025	CHST11	Q9NPF2	352 aa		18.49	■□□□□ 0.55
CD44-222	ENST00000526025	FANCF	Q9NPI8	374 aa		18.49	■□□□□ 0.55
CD44-222	ENST00000526025	CCM2L	Q9NUG4	571 aa	Predicted RBP	18.49	■□□□□ 0.55
CD44-222	ENST00000526025		A0A087WUU8	490 aa		18.48	■□□□□ 0.55
CD44-222	ENST00000526025	ENO4	A6NNW6	628 aa		18.48	■□□□□ 0.55
CD44-222	ENST00000526025		M0R082	166 aa		18.48	■□□□□ 0.55
CD44-222	ENST00000526025	DIRAS1	O95057	198 aa		18.48	■□□□□ 0.55
CD44-222	ENST00000526025	GADD45G	O95257	159 aa		18.48	■□□□□ 0.55
CD44-222	ENST00000526025	CD8B	P10966	210 aa		18.48	■□□□□ 0.55
CD44-222	ENST00000526025	KLK2	P20151	261 aa		18.48	■□□□□ 0.55
CD44-222	ENST00000526025	GRPR	P30550	384 aa		18.48	■□□□□ 0.55
CD44-222	ENST00000526025	AGTR1	P30556	359 aa		18.48	■□□□□ 0.55
CD44-222	ENST00000526025	HMGA2	P52926	109 aa		18.48	■□□□□ 0.55
CD44-222	ENST00000526025	SPIB	Q01892	262 aa		18.48	■□□□□ 0.55
CD44-222	ENST00000526025	PRKCD	Q05655	676 aa		18.48	■□□□□ 0.55
CD44-222	ENST00000526025	SLC17A1	Q14916	467 aa		18.48	■□□□□ 0.55
CD44-222	ENST00000526025	ZNF417	Q8TAU3	575 aa		18.48	■□□□□ 0.55
CD44-222	ENST00000526025	CA5BP1	Q8WTZ4	195 aa		18.48	■□□□□ 0.55
CD44-222	ENST00000526025	SGTB	Q96EQ0	304 aa		18.48	■□□□□ 0.55
CD44-222	ENST00000526025	DUS3L	Q96G46	650 aa	Known RBP	18.48	■□□□□ 0.55
CD44-222	ENST00000526025	MOGAT1	Q96PD6	335 aa		18.48	■□□□□ 0.55
CD44-222	ENST00000526025	ZNF587	Q96SQ5	575 aa	Predicted RBP	18.48	■□□□□ 0.55
CD44-222	ENST00000526025	NANS	Q9NR45	359 aa		18.48	■□□□□ 0.55
CD44-222	ENST00000526025	JKAMP	Q9P055	326 aa		18.48	■□□□□ 0.55
CD44-222	ENST00000526025	HCFC1	P51610	2035 aa		18.47	■□□□□ 0.55
CD44-222	ENST00000526025	DOPEY2	Q9Y3R5	2298 aa		18.47	■□□□□ 0.55
CD44-222	ENST00000526025	KPNA4	O00629	521 aa	Predicted RBP	18.47	■□□□□ 0.55
CD44-222	ENST00000526025	ASAH2B	P0C7U1	165 aa		18.47	■□□□□ 0.55
CD44-222	ENST00000526025	FUT4	P22083	530 aa		18.47	■□□□□ 0.55
CD44-222	ENST00000526025	RRM2	P31350	389 aa		18.47	■□□□□ 0.55
CD44-222	ENST00000526025	ZSCAN26	Q16670	478 aa		18.47	■□□□□ 0.55
CD44-222	ENST00000526025	FBXL19-AS1	Q494R0	122 aa		18.47	■□□□□ 0.55
CD44-222	ENST00000526025	TMEM201	Q5SNT2	666 aa		18.47	■□□□□ 0.55
CD44-222	ENST00000526025	PODNL1	Q6PEZ8	512 aa		18.47	■□□□□ 0.55
CD44-222	ENST00000526025	ZNF730	Q6ZMV8	503 aa		18.47	■□□□□ 0.55
CD44-222	ENST00000526025	SLC46A3	Q7Z3Q1	461 aa		18.47	■□□□□ 0.55
CD44-222	ENST00000526025	LIX1L	Q8IVB5	337 aa		18.47	■□□□□ 0.55
CD44-222	ENST00000526025	CCDC103	Q8IW40	242 aa		18.47	■□□□□ 0.55
CD44-222	ENST00000526025	NRM	Q8IXM6	262 aa		18.47	■□□□□ 0.55
CD44-222	ENST00000526025	C10orf53	Q8N6V4	93 aa		18.47	■□□□□ 0.55
CD44-222	ENST00000526025	RELL2	Q8NC24	303 aa	Predicted RBP	18.47	■□□□□ 0.55
CD44-222	ENST00000526025	OR5J2	Q8NH18	312 aa		18.47	■□□□□ 0.55
CD44-222	ENST00000526025	PFN4	Q8NHR9	129 aa		18.47	■□□□□ 0.55
CD44-222	ENST00000526025	STARD4	Q96DR4	205 aa		18.47	■□□□□ 0.55
CD44-222	ENST00000526025	CHID1	Q9BWS9	393 aa		18.47	■□□□□ 0.55
CD44-222	ENST00000526025	KRCC1	Q9NPI7	259 aa	Predicted RBP	18.47	■□□□□ 0.55
CD44-222	ENST00000526025	AURKC	Q9UQB9	309 aa		18.47	■□□□□ 0.55
CD44-222	ENST00000526025	TMEM5	Q9Y2B1	443 aa		18.47	■□□□□ 0.55
CD44-222	ENST00000526025	TESMIN	Q9Y4I5	508 aa		18.47	■□□□□ 0.55
CD44-222	ENST00000526025	USP9Y	O00507	2555 aa	Predicted RBP	18.47	■□□□□ 0.55
CD44-222	ENST00000526025	FREM1	Q5H8C1	2179 aa		18.47	■□□□□ 0.55
CD44-222	ENST00000526025	TRBV4-1	A0A0J9YWV2	114 aa		18.46	■□□□□ 0.55
CD44-222	ENST00000526025	MSTN	O14793	375 aa		18.46	■□□□□ 0.55
CD44-222	ENST00000526025	RAMP1	O60894	148 aa		18.46	■□□□□ 0.55
CD44-222	ENST00000526025	OR7A10	O76100	309 aa		18.46	■□□□□ 0.55
CD44-222	ENST00000526025	CH25H	O95992	272 aa		18.46	■□□□□ 0.55
CD44-222	ENST00000526025	RNF224	P0DH78	156 aa		18.46	■□□□□ 0.55
CD44-222	ENST00000526025	PTN	P21246	168 aa		18.46	■□□□□ 0.55
CD44-222	ENST00000526025	BMP5	P22003	454 aa		18.46	■□□□□ 0.55
CD44-222	ENST00000526025	LIMS1	P48059	325 aa		18.46	■□□□□ 0.55
CD44-222	ENST00000526025	PCYT1A	P49585	367 aa		18.46	■□□□□ 0.55
CD44-222	ENST00000526025	ANKDD1A	Q495B1	522 aa		18.46	■□□□□ 0.55
CD44-222	ENST00000526025	FGD3	Q5JSP0	725 aa		18.46	■□□□□ 0.55
CD44-222	ENST00000526025	TMEM225	Q6GV28	225 aa		18.46	■□□□□ 0.55
CD44-222	ENST00000526025	OR2T5	Q6IEZ7	315 aa		18.46	■□□□□ 0.55
CD44-222	ENST00000526025	RRM2B	Q7LG56	351 aa		18.46	■□□□□ 0.55
CD44-222	ENST00000526025	LSR	Q86X29	649 aa	Predicted RBP	18.46	■□□□□ 0.55
CD44-222	ENST00000526025	TUSC5	Q8IXB3	177 aa		18.46	■□□□□ 0.55
CD44-222	ENST00000526025	LINC00471	Q8N535	108 aa		18.46	■□□□□ 0.55
CD44-222	ENST00000526025	CNEP1R1	Q8N9A8	125 aa		18.46	■□□□□ 0.55

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