RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 LRRC39Q96DD0 335 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 C19orf60Q96EN9 201 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 CCDC51Q96ER9 411 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 SIPA1Q96FS4 1042 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 PDLIM5Q96HC4 596 aaKnown RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 MS4A14Q96JA4 679 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 LURAP1Q96LR2 239 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF597Q96LX8 424 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 SPATA33Q96N06 139 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 CSPG4P5Q96PW8 444 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 SSX3Q99909 188 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 NAA11Q9BSU3 229 aaPredicted RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 MTG1Q9BT17 334 aaPredicted RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 DCUN1D5Q9BTE7 237 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 KATNB1Q9BVA0 655 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF416Q9BWM5 594 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 CHID1Q9BWS9 393 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 PAPOLGQ9BWT3 736 aaKnown RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 MROQ9BYG7 248 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 MRPL37Q9BZE1 423 aaKnown RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 ZYG11BQ9C0D3 744 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 POLR1EQ9GZS1 481 aaKnown RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 RACGAP1Q9H0H5 632 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 SLC26A1Q9H2B4 701 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 TUBB1Q9H4B7 451 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 RIBC2Q9H4K1 309 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 ASB7Q9H672 318 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 LMAN1LQ9HAT1 526 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 NMUR1Q9HB89 426 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 C3orf14Q9HBI5 128 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 RAVER2Q9HCJ3 691 aaKnown RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 FAM212BQ9NTI7 297 aaPredicted RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 NUDT15Q9NV35 164 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 DNAJC11Q9NVH1 559 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 FGFR1OP2Q9NVK5 253 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 GLTPQ9NZD2 209 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 NYAP2Q9P242 653 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 RCOR3Q9P2K3 495 aaPredicted RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 EIF3KQ9UBQ5 218 aaKnown RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF229Q9UJW7 825 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 FBXL4Q9UKA2 621 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 DNAJC12Q9UKB3 198 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 APPL1Q9UKG1 709 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 POMT2Q9UKY4 750 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 RUVBL2Q9Y230 463 aaKnown RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 NCKAP1Q9Y2A7 1128 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 DHRS7Q9Y394 339 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 SBDSQ9Y3A5 250 aaKnown RBP eCLIP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 PPIL1Q9Y3C6 166 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 ASB4Q9Y574 426 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 CPQQ9Y646 472 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 CACNA1FO60840 1977 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 ATG2AQ2TAZ0 1938 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 ADAMTS9Q9P2N4 1935 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 TANC1Q9C0D5 1861 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 STAB1Q9NY15 2570 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 KIF20BQ96Q89 1820 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 MUC22E2RYF6 1773 aaPredicted RBP1.77□□□□□ -2.13
HMGB1-208ENST00000490788 APC2O95996 2303 aa1.77□□□□□ -2.13
HMGB1-208ENST00000490788 NOTCH1P46531 2555 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 ANKHD1Q8IWZ3 2542 aaKnown RBP1.76□□□□□ -2.13
HMGB1-208ENST00000490788 CCDC168Q8NDH2 2452 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 MN1Q10571 1320 aaPredicted RBP1.76□□□□□ -2.13
HMGB1-208ENST00000490788 DOCK2Q92608 1830 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 A0A087WZ39 114 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 LOC100506127A0A0U1RQW1 187 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 BCLAF3A2AJT9 711 aaKnown RBP1.76□□□□□ -2.13
HMGB1-208ENST00000490788 EFCAB10A6NFE3 127 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 MFSD2BA6NFX1 497 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 NKX6-3A6NJ46 265 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 TMEM210A6NLX4 147 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 CENPXA8MT69 81 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 RNF212BA8MTL3 300 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 HIDE1A8MVS5 230 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF487B1APH4 448 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 EPM2AB3EWF7 344 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF879B4DU55 563 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 GPR89AB7ZAQ6 455 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 E5RGE8 158 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 E9PAM4 449 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 NPIPB9F8W1W9 429 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 TMX2-CTNND1H3BSU7 103 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 CCDC188H7C350 402 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 CCL24O00175 119 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 NDUFS8O00217 210 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 PSMD12O00232 456 aaPredicted RBP1.76□□□□□ -2.13
HMGB1-208ENST00000490788 UBE2CO00762 179 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 GPAA1O43292 621 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 PRPSAP2O60256 369 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 DFNA5O60443 496 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 FMO6PO60774 539 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 HUS1O60921 280 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 SPAG7O75391 227 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 MED6O75586 246 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 CLPXO76031 633 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 RECQL5O94762 991 aaPredicted RBP1.76□□□□□ -2.13
HMGB1-208ENST00000490788 CCNB2O95067 398 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 PRAMEF12O95522 483 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 HPP00738 406 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 CSTAP01040 98 aa1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms