RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 FRS3O43559 492 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 HNRNPCL1O60812 293 aaKnown RBP10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 F12P00748 615 aaPredicted RBP10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 HNRNPCL4P0DMR1 293 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 PAX7P23759 505 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 SELENOPP49908 381 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 CRISP3P54108 245 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 DSTNP60981 165 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 LGALS3BPQ08380 585 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 HIKESHIQ53FT3 197 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 HHATQ5VTY9 493 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 C1orf140Q5VVS0 124 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 HMBOX1Q6NT76 420 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 PODNL1Q6PEZ8 512 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 CLEC2AQ6UVW9 174 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 SERPINA11Q86U17 422 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 FAM169BQ8N8A8 192 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 OR1K1Q8NGR3 316 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 MFSD8Q8NHS3 518 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 MAGEE2Q8TD90 523 aaPredicted RBP10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 HTRA1Q92743 480 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 TMEM19Q96HH6 336 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 ZNF317Q96PQ6 595 aaPredicted RBP10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 OR52B2Q96RD2 323 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 ZBTB18Q99592 522 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 PAIP2Q9BPZ3 127 aaKnown RBP10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 LINC00470Q9BZP3 86 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 PAIP1Q9H074 479 aaKnown RBP10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 THUMPD1Q9NXG2 353 aaKnown RBP10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 MOKQ9UQ07 419 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 PCDHB14Q9Y5E9 798 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 GMEB1Q9Y692 573 aa10.68□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 IGHV1-18A0A0C4DH31 117 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 OR6C65A6NJZ3 312 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 ATP6V1G2-DDX39BF2Z307 99 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 KLF11O14901 512 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 WNT11O96014 354 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 IGLV1-44P01699 117 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 BCHEP06276 602 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 NUDT7P0C024 238 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 KITP10721 976 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 HOXB1P14653 301 aaPredicted RBP10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 CRATP43155 626 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 CHRNB3Q05901 458 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 LARS2Q15031 903 aaKnown RBP10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 RGNQ15493 299 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 TBRG1Q3YBR2 411 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 RPS26P11Q5JNZ5 115 aaPredicted RBP10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 TMEM225Q6GV28 225 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 ANKRD16Q6P6B7 361 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 C6orf89Q6UWU4 347 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 NHLRC1Q6VVB1 395 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 ABHD12BQ7Z5M8 362 aaPredicted RBP10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 LSMEM1Q8N8F7 131 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 ANKRD42Q8N9B4 389 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 ANKK1Q8NFD2 765 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 OR9I1Q8NGQ6 314 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 FAM168AQ92567 244 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 ZBTB9Q96C00 473 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 TLCD1Q96CP7 247 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 ITCHQ96J02 903 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 MANSC1Q9H8J5 431 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 SLC52A3Q9NQ40 469 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 TMEM45AQ9NWC5 275 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 B3GAT1Q9P2W7 334 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 ZNF232Q9UNY5 417 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 RASD1Q9Y272 281 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 IFT52Q9Y366 437 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 ATP23Q9Y6H3 246 aa10.67□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 LOC102725191A0A1B0GVB3 256 aa10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 UPK3AO75631 287 aa10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 LY6HO94772 140 aa10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 LGI1O95970 557 aa10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 IFNA2P01563 188 aa10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 IGKV3-15P01624 115 aa10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 CSF3P09919 207 aa10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 FAM157CP0CG43 387 aa10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 IGHV4-31P0DP07 118 aa10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 POLR2JP52435 117 aaKnown RBP10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 COPZ1P61923 177 aa10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 CHRFAM7AQ494W8 412 aa10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 ATG16L1Q676U5 607 aa10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 EPGNQ6UW88 154 aa10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 GPAT4Q86UL3 456 aa10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 FUNDC1Q8IVP5 155 aa10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 PHC2Q8IXK0 858 aa10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 MSRB3Q8IXL7 192 aa10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 CADM2Q8N3J6 435 aa10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 SLC38A2Q96QD8 506 aa10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 KATNB1Q9BVA0 655 aa10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 RMND5AQ9H871 391 aa10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 C12orf10Q9HB07 376 aa10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 A4GALTQ9NPC4 353 aa10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 ADPRHL2Q9NX46 363 aa10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 PMF1-BGLAPU3KQ54 211 aa10.66□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 ZNF587BE7ETH6 402 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 CLIC1O00299 241 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 NR5A2O00482 541 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 UBDO15205 165 aa10.65□□□□□ -0.7
MSH5-SAPCD1-205ENST00000476085 PDE5AO76074 875 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms