RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 ANKRD61A6NGH8 418 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 KCNK2O95069 426 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 IL3P08700 152 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 UBL4AP11441 157 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 PRPS2P11908 318 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 BCKDHAP12694 445 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 IGLL1P15814 213 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 CD80P33681 288 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 IER3P46695 156 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 CCR4P51679 360 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 TUBA1BP68363 451 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 TUBA4AP68366 448 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 H3F3AP84243 136 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 MERTKQ12866 999 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 OR4D1Q15615 310 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 GSG1Q2KHT4 349 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 CBLN3Q6UW01 205 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 TUBA1AQ71U36 451 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 ZNF771Q7L3S4 317 aaPredicted RBP6.74□□□□□ -1.33
USP54-211ENST00000474929 MYPOPQ86VE0 399 aaPredicted RBP6.74□□□□□ -1.33
USP54-211ENST00000474929 PTOV1Q86YD1 416 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 COX18Q8N8Q8 333 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 OR2T6Q8NHC8 308 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 PIK3R3Q92569 461 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 SSBP3Q9BWW4 388 aaPredicted RBP6.74□□□□□ -1.33
USP54-211ENST00000474929 LINC00470Q9BZP3 86 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 RHOJQ9H4E5 214 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 IPPKQ9H8X2 491 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 ACOXLQ9NUZ1 547 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 TMEM181Q9P2C4 612 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 MYEF2Q9P2K5 600 aaKnown RBP6.74□□□□□ -1.33
USP54-211ENST00000474929 CGGBP1Q9UFW8 167 aaPredicted RBP6.74□□□□□ -1.33
USP54-211ENST00000474929 PCDHGB4Q9UN71 923 aa6.74□□□□□ -1.33
USP54-211ENST00000474929 A0A096LPE4 126 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 GNG14A0A1W2PPG7 69 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 A0A1W2PPZ6 126 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 F5H0A9 414 aaPredicted RBP6.73□□□□□ -1.33
USP54-211ENST00000474929 P2RY10O00398 339 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 NR5A2O00482 541 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 ZNF264O43296 627 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 ANGPTL7O43827 346 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 FBXO24O75426 580 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 IGHV2-70P01814 119 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 JUNP05412 331 aaKnown RBP6.73□□□□□ -1.33
USP54-211ENST00000474929 ZNF35P13682 527 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 SNRPBP14678 240 aaKnown RBP6.73□□□□□ -1.33
USP54-211ENST00000474929 STMN1P16949 149 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 EPHA3P29320 983 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 ETV4P43268 484 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 CAPZA2P47755 286 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 MAP2K6P52564 334 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 TERF1P54274 439 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 OR2B6P58173 313 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 GNB2P62879 340 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 ZNF763Q0D2J5 394 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 GTF2H2Q13888 395 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 FRG1Q14331 258 aaKnown RBP6.73□□□□□ -1.33
USP54-211ENST00000474929 TOMM34Q15785 309 aaPredicted RBP6.73□□□□□ -1.33
USP54-211ENST00000474929 NSUN5P1Q3KNT7 163 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 GGTA1PQ4G0N0 100 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 ZMAT1Q5H9K5 638 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 COX20Q5RI15 118 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 CLEC6AQ6EIG7 209 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 GTF2H2CQ6P1K8 395 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 ZCCHC12Q6PEW1 402 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 MDP1Q86V88 176 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 KLHDC1Q8N7A1 406 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 OR4C13Q8NGP0 309 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 DCAKDQ8WVC6 231 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 RAB40AQ8WXH6 277 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 PMM1Q92871 262 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 ATP6V1E2Q96A05 226 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 ELP4Q96EB1 424 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 ZNF837Q96EG3 531 aaPredicted RBP6.73□□□□□ -1.33
USP54-211ENST00000474929 NEURL3Q96EH8 262 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 MS4A4EQ96PG1 132 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 MMP28Q9H239 520 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 NELFAQ9H3P2 528 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 EQTNQ9NQ60 294 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 MIEF1Q9NQG6 463 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 ACER3Q9NUN7 267 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 GUCA1BQ9UMX6 200 aa6.73□□□□□ -1.33
USP54-211ENST00000474929 PACSIN2Q9UNF0 486 aaPredicted RBP6.73□□□□□ -1.33
USP54-211ENST00000474929 TANC2Q9HCD6 1990 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 PLSCR5A0PG75 271 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 AQP7P3A6NL99 342 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 RPL36A-HNRNPH2H7BZ11 118 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 PCDH7O60245 1069 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 ENTPD5O75356 428 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 UBOX5O94941 541 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 VAMP5O95183 116 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 RAB36O95755 333 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 CLIC3O95833 236 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 IGHV4-59P01825 116 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 HSD3B1P14060 373 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 FAHP16930 419 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 DDCP20711 480 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 DRD4P21917 467 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 HSD3B2P26439 372 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 MSX2P35548 267 aaPredicted RBP6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms