RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 IKZF5Q9H5V7 419 aa14.28□□□□□ -0.12
COL9A3-208ENST00000469802 C12orf10Q9HB07 376 aa14.28□□□□□ -0.12
COL9A3-208ENST00000469802 BARX1Q9HBU1 254 aaPredicted RBP14.28□□□□□ -0.12
COL9A3-208ENST00000469802 VAPAQ9P0L0 249 aa14.28□□□□□ -0.12
COL9A3-208ENST00000469802 B3GALT5Q9Y2C3 310 aa14.28□□□□□ -0.12
COL9A3-208ENST00000469802 ANK3Q12955 4377 aaKnown RBP14.27□□□□□ -0.12
COL9A3-208ENST00000469802 RNF223E7ERA6 249 aa14.27□□□□□ -0.13
COL9A3-208ENST00000469802 M0R1B8 84 aa14.27□□□□□ -0.13
COL9A3-208ENST00000469802 NR5A2O00482 541 aa14.27□□□□□ -0.13
COL9A3-208ENST00000469802 AHSA1O95433 338 aa14.27□□□□□ -0.13
COL9A3-208ENST00000469802 PCSK6P29122 969 aa14.27□□□□□ -0.13
COL9A3-208ENST00000469802 ATP4BP51164 291 aa14.27□□□□□ -0.13
COL9A3-208ENST00000469802 HOXC5Q00444 222 aa14.27□□□□□ -0.13
COL9A3-208ENST00000469802 GCNT6Q5T4J0 391 aa14.27□□□□□ -0.13
COL9A3-208ENST00000469802 CREB3L2Q70SY1 520 aa14.27□□□□□ -0.13
COL9A3-208ENST00000469802 PRIMA1Q86XR5 153 aa14.27□□□□□ -0.13
COL9A3-208ENST00000469802 EPHX4Q8IUS5 362 aa14.27□□□□□ -0.13
COL9A3-208ENST00000469802 LSMEM1Q8N8F7 131 aa14.27□□□□□ -0.13
COL9A3-208ENST00000469802 MFSD8Q8NHS3 518 aa14.27□□□□□ -0.13
COL9A3-208ENST00000469802 NFKBIDQ8NI38 313 aa14.27□□□□□ -0.13
COL9A3-208ENST00000469802 STON2Q8WXE9 905 aa14.27□□□□□ -0.13
COL9A3-208ENST00000469802 REG4Q9BYZ8 158 aa14.27□□□□□ -0.13
COL9A3-208ENST00000469802 CBLN4Q9NTU7 201 aa14.27□□□□□ -0.13
COL9A3-208ENST00000469802 CCDC167Q9P0B6 97 aa14.27□□□□□ -0.13
COL9A3-208ENST00000469802 ALPK2Q86TB3 2170 aa14.26□□□□□ -0.13
COL9A3-208ENST00000469802 C5orf58C9J3I9 102 aa14.26□□□□□ -0.13
COL9A3-208ENST00000469802 PNMTP11086 282 aa14.26□□□□□ -0.13
COL9A3-208ENST00000469802 GPX2P18283 190 aa14.26□□□□□ -0.13
COL9A3-208ENST00000469802 PTNP21246 168 aa14.26□□□□□ -0.13
COL9A3-208ENST00000469802 PPIBP23284 216 aaKnown RBP14.26□□□□□ -0.13
COL9A3-208ENST00000469802 HTR2AP28223 471 aa14.26□□□□□ -0.13
COL9A3-208ENST00000469802 SELENOPP49908 381 aa14.26□□□□□ -0.13
COL9A3-208ENST00000469802 AQP5P55064 265 aa14.26□□□□□ -0.13
COL9A3-208ENST00000469802 IRX1P78414 480 aaPredicted RBP14.26□□□□□ -0.13
COL9A3-208ENST00000469802 TMEM225Q6GV28 225 aa14.26□□□□□ -0.13
COL9A3-208ENST00000469802 ZNF544Q6NX49 715 aa14.26□□□□□ -0.13
COL9A3-208ENST00000469802 DHRS4L2Q6PKH6 230 aa14.26□□□□□ -0.13
COL9A3-208ENST00000469802 ABHD12BQ7Z5M8 362 aaPredicted RBP14.26□□□□□ -0.13
COL9A3-208ENST00000469802 MAPK1IP1LQ8NDC0 245 aa14.26□□□□□ -0.13
COL9A3-208ENST00000469802 HS6ST2Q96MM7 605 aa14.26□□□□□ -0.13
COL9A3-208ENST00000469802 ALKBH3Q96Q83 286 aaPredicted RBP14.26□□□□□ -0.13
COL9A3-208ENST00000469802 C1QTNF6Q9BXI9 259 aa14.26□□□□□ -0.13
COL9A3-208ENST00000469802 CACNG6Q9BXT2 260 aa14.26□□□□□ -0.13
COL9A3-208ENST00000469802 TMEM38AQ9H6F2 299 aa14.26□□□□□ -0.13
COL9A3-208ENST00000469802 OBP2BQ9NPH6 170 aa14.26□□□□□ -0.13
COL9A3-208ENST00000469802 B3GAT1Q9P2W7 334 aa14.26□□□□□ -0.13
COL9A3-208ENST00000469802 POU2F3Q9UKI9 436 aa14.26□□□□□ -0.13
COL9A3-208ENST00000469802 RASD1Q9Y272 281 aa14.26□□□□□ -0.13
COL9A3-208ENST00000469802 IGKV1D-42A0A075B6H8 117 aa14.25□□□□□ -0.13
COL9A3-208ENST00000469802 A0A096LNT2 108 aa14.25□□□□□ -0.13
COL9A3-208ENST00000469802 H7C417 338 aa14.25□□□□□ -0.13
COL9A3-208ENST00000469802 PRPS1P60891 318 aa14.25□□□□□ -0.13
COL9A3-208ENST00000469802 CDK6Q00534 326 aa14.25□□□□□ -0.13
COL9A3-208ENST00000469802 LGALS3BPQ08380 585 aa14.25□□□□□ -0.13
COL9A3-208ENST00000469802 SQLEQ14534 574 aa14.25□□□□□ -0.13
COL9A3-208ENST00000469802 HIKESHIQ53FT3 197 aa14.25□□□□□ -0.13
COL9A3-208ENST00000469802 REEP3Q6NUK4 255 aa14.25□□□□□ -0.13
COL9A3-208ENST00000469802 LINGO2Q7L985 606 aa14.25□□□□□ -0.13
COL9A3-208ENST00000469802 MUC15Q8N387 334 aa14.25□□□□□ -0.13
COL9A3-208ENST00000469802 OR1K1Q8NGR3 316 aa14.25□□□□□ -0.13
COL9A3-208ENST00000469802 KTI12Q96EK9 354 aaPredicted RBP14.25□□□□□ -0.13
COL9A3-208ENST00000469802 LINC00470Q9BZP3 86 aa14.25□□□□□ -0.13
COL9A3-208ENST00000469802 NELFAQ9H3P2 528 aa14.25□□□□□ -0.13
COL9A3-208ENST00000469802 SEC14L4Q9UDX3 406 aa14.25□□□□□ -0.13
COL9A3-208ENST00000469802 RCE1Q9Y256 329 aa14.25□□□□□ -0.13
COL9A3-208ENST00000469802 DNHD1Q96M86 4753 aa14.25□□□□□ -0.13
COL9A3-208ENST00000469802 A0A1B0GWA3 101 aa14.24□□□□□ -0.13
COL9A3-208ENST00000469802 OR6C65A6NJZ3 312 aa14.24□□□□□ -0.13
COL9A3-208ENST00000469802 ELOA3DA6NLF2 546 aaPredicted RBP14.24□□□□□ -0.13
COL9A3-208ENST00000469802 ZNF587BE7ETH6 402 aa14.24□□□□□ -0.13
COL9A3-208ENST00000469802 ATP6V1G2-DDX39BF2Z307 99 aa14.24□□□□□ -0.13
COL9A3-208ENST00000469802 TPST1O60507 370 aa14.24□□□□□ -0.13
COL9A3-208ENST00000469802 ZNF432O94892 652 aa14.24□□□□□ -0.13
COL9A3-208ENST00000469802 WNT11O96014 354 aa14.24□□□□□ -0.13
COL9A3-208ENST00000469802 RPS5P46782 204 aaKnown RBP14.24□□□□□ -0.13
COL9A3-208ENST00000469802 PPP2R2BQ00005 443 aa14.24□□□□□ -0.13
COL9A3-208ENST00000469802 DMTNQ08495 405 aa14.24□□□□□ -0.13
COL9A3-208ENST00000469802 ADRM1Q16186 407 aa14.24□□□□□ -0.13
COL9A3-208ENST00000469802 ELOA3BQ3SY89 546 aa14.24□□□□□ -0.13
COL9A3-208ENST00000469802 TBRG1Q3YBR2 411 aa14.24□□□□□ -0.13
COL9A3-208ENST00000469802 GLIPR1L2Q4G1C9 344 aa14.24□□□□□ -0.13
COL9A3-208ENST00000469802 KLHL24Q6TFL4 600 aa14.24□□□□□ -0.13
COL9A3-208ENST00000469802 C5orf46Q6UWT4 87 aa14.24□□□□□ -0.13
COL9A3-208ENST00000469802 DLEU7Q6UYE1 221 aa14.24□□□□□ -0.13
COL9A3-208ENST00000469802 FBXL14Q8N1E6 418 aa14.24□□□□□ -0.13
COL9A3-208ENST00000469802 DEPDC4Q8N2C3 294 aa14.24□□□□□ -0.13
COL9A3-208ENST00000469802 ELOA3Q8NG57 546 aa14.24□□□□□ -0.13
COL9A3-208ENST00000469802 CPPED1Q9BRF8 314 aaPredicted RBP14.24□□□□□ -0.13
COL9A3-208ENST00000469802 ZNF385DQ9H6B1 395 aa14.24□□□□□ -0.13
COL9A3-208ENST00000469802 FKRPQ9H9S5 495 aa14.24□□□□□ -0.13
COL9A3-208ENST00000469802 TESQ9UGI8 421 aaKnown RBP14.24□□□□□ -0.13
COL9A3-208ENST00000469802 CORO2BQ9UQ03 480 aa14.24□□□□□ -0.13
COL9A3-208ENST00000469802 ARPC4-TTLL3A0A0A6YYG9 625 aa14.23□□□□□ -0.13
COL9A3-208ENST00000469802 UPK3AO75631 287 aa14.23□□□□□ -0.13
COL9A3-208ENST00000469802 LGI1O95970 557 aa14.23□□□□□ -0.13
COL9A3-208ENST00000469802 FABP6P51161 128 aa14.23□□□□□ -0.13
COL9A3-208ENST00000469802 SCARB2Q14108 478 aa14.23□□□□□ -0.13
COL9A3-208ENST00000469802 AGKQ53H12 422 aa14.23□□□□□ -0.13
COL9A3-208ENST00000469802 FAM69AQ5T7M9 428 aa14.23□□□□□ -0.13
COL9A3-208ENST00000469802 FAM91A1Q658Y4 838 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms