RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 LIPIQ6XZB0 460 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 LAS2Q8IYD9 372 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 TRAM1L1Q8N609 369 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 TMED6Q8WW62 240 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 CACNG4Q9UBN1 327 aa12.4□□□□□ -0.42
USP40-208ENST00000450966 DCDC2BA2VCK2 349 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 SYT5O00445 386 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 ITGB2P05107 769 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 PIPP12273 146 aaPredicted RBP12.39□□□□□ -0.43
USP40-208ENST00000450966 GALNT2Q10471 571 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 PLEKHS1Q5SXH7 462 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 HFE2Q6ZVN8 426 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 SFXN5Q8TD22 340 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 PRAP1Q96NZ9 151 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 METTL7AQ9H8H3 244 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 KCNIP2Q9NS61 270 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 C1orf123Q9NWV4 160 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 RGPD1P0DJD0 1748 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 H3BSH0 61 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 M0QZQ0 153 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 SERPINA2P20848 420 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 NOVP48745 357 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 RAB7AP51149 207 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 HSD11B2P80365 405 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 COL5A1-AS1Q5SY13 56 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 TMPRSS9Q7Z410 1059 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 ZNF695Q8IW36 515 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 OR14A16Q8NHC5 309 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 ZNF516Q92618 1163 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 KATNB1Q9BVA0 655 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 IL26Q9NPH9 171 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 SIRT7Q9NRC8 400 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 GPR173Q9NS66 373 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 SERTAD4Q9NUC0 356 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 NPFFR2Q9Y5X5 522 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 SLC9B1P1A6NJY1 282 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 GPRIN2O60269 458 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 PIGAP37287 484 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 CLDN6P56747 220 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 C4orf17Q53FE4 359 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 TMEM31Q5JXX7 168 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 KCTD11Q693B1 232 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 THOC6Q86W42 341 aaKnown RBP12.39□□□□□ -0.43
USP40-208ENST00000450966 GPR148Q8TDV2 347 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 LMF1Q96S06 567 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 UTS2RQ9UKP6 389 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 ETV7Q9Y603 341 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 A0A1B0GV72 72 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 OR6C68A6NDL8 312 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 ZNF840PA6NDX5 716 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 ANKRD66B4E2M5 251 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 SLC16A5O15375 505 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 RNGTTO60942 597 aaKnown RBP12.39□□□□□ -0.43
USP40-208ENST00000450966 NXNL2Q5VZ03 156 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 C19orf35Q6ZS72 473 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 GABRG1Q8N1C3 465 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 PHYHIPLQ96FC7 376 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 ORAI3Q9BRQ5 295 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 GSTO2Q9H4Y5 243 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 GHRLQ9UBU3 117 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 KCNG2Q9UJ96 466 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 RPH3ALQ9UNE2 315 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 LTBP4Q8N2S1 1624 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 ACOD1A6NK06 481 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 SCAMP2O15127 329 aaKnown RBP12.39□□□□□ -0.43
USP40-208ENST00000450966 TGM5O43548 720 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 EDN3P14138 238 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 SAPCD1Q5SSQ6 148 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 FAM162BQ5T6X4 162 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 Q6ZRG5 221 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 FCRLAQ7L513 359 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 OVCH2Q7RTZ1 564 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 OR13C3Q8NGS6 347 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 STT3BQ8TCJ2 826 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 TVP23CQ96ET8 276 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 GPR34Q9UPC5 381 aa12.39□□□□□ -0.43
USP40-208ENST00000450966 MEIKINA0A087WXM9 373 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 H7BY64 318 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 TRAPPC6AO75865 159 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 CER1O95813 267 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 CRYBA1P05813 215 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 SULT1A2P50226 295 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 OR5I1Q13606 314 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 OR4D6Q8NGJ1 314 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 UPRTQ96BW1 309 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 A0A1B0GV90 55 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 OR6C76A6NM76 312 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 GABARAPH6UMI1 98 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 PPM1DO15297 605 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 PDGFBP01127 241 aaPredicted RBP12.38□□□□□ -0.43
USP40-208ENST00000450966 LIPCP11150 499 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 GP1BBP13224 206 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 ABCD3P28288 659 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 POLR2IP36954 125 aaKnown RBP12.38□□□□□ -0.43
USP40-208ENST00000450966 RELTQ969Z4 430 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 TSGA13Q96PP4 275 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 CPNE7Q9UBL6 633 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 NENFQ9UMX5 172 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 SLC22A14Q9Y267 594 aa12.38□□□□□ -0.43
USP40-208ENST00000450966 TMEM218A2RU14 115 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms