RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 HNRNPFP52597 415 aaKnown RBP6.39□□□□□ -1.39
SCN1A-204ENST00000423058 CDKN2DP55273 166 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 RAB38P57729 211 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 ZNF91Q05481 1191 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 MEP1BQ16820 701 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 OGFOD3Q6PK18 319 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 ZNRF4Q8WWF5 429 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 MUS81Q96NY9 551 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 MED18Q9BUE0 208 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 ABHD6Q9BV23 337 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 P2RY12Q9H244 342 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 GAREM1Q9H706 876 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 IL26Q9NPH9 171 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 ZNF281Q9Y2X9 895 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 CACNG2Q9Y698 323 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 ST8SIA5O15466 376 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 SNRNP200O75643 2136 aaKnown RBP6.39□□□□□ -1.39
SCN1A-204ENST00000423058 GGT1P19440 569 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 ARR3P36575 388 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 ZNF628Q5EBL2 1059 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 FCRLBQ6BAA4 426 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 ELP2Q6IA86 826 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 LYPD8Q6UX82 237 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 NDUFAF7Q7L592 441 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 SERPINA11Q86U17 422 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 OR51A2Q8NGJ7 313 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 SLC35E1Q96K37 410 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 C4orf36Q96KX1 117 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 FEVQ99581 238 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 DPCDQ9BVM2 203 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-204ENST00000423058 FAM234AQ9H0X4 552 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 AK6Q9Y3D8 172 aaKnown RBP6.39□□□□□ -1.39
SCN1A-204ENST00000423058 GOLT1BQ9Y3E0 138 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 MMACHCQ9Y4U1 282 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 TLCD2A6NGC4 264 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 FAM171A2A8MVW0 826 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 K7EPK0 472 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 HLA-AP01891 365 aaKnown RBP6.39□□□□□ -1.39
SCN1A-204ENST00000423058 SRP14P37108 136 aaKnown RBP6.39□□□□□ -1.39
SCN1A-204ENST00000423058 ERVK-25P63136 954 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 ERHP84090 104 aaKnown RBP6.39□□□□□ -1.39
SCN1A-204ENST00000423058 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.39□□□□□ -1.39
SCN1A-204ENST00000423058 DND1Q8IYX4 353 aaKnown RBP6.39□□□□□ -1.39
SCN1A-204ENST00000423058 FAM71E2Q8N5Q1 922 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 OR7G3Q8NG95 312 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 ZBTB8AQ96BR9 441 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 ZNF446Q9NWS9 450 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 KNL1Q8NG31 2342 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 LOC285095A0A1B0GVY8 99 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 ANTXRLA6NF34 631 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 SPDEFO95238 335 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 GPR75O95800 540 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 GLAP06280 429 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 IGFBP1P08833 259 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-204ENST00000423058 CNR2P34972 360 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 BMXP51813 675 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 CXCR4P61073 352 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 RGNQ15493 299 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 OR1Q1Q15612 314 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 TMEM41BQ5BJD5 291 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 SYT6Q5T7P8 510 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-204ENST00000423058 H2BFWTQ7Z2G1 175 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 SCML4Q8N228 414 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 CD200R1Q8TD46 325 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 KIRREL1Q96J84 757 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 KATNB1Q9BVA0 655 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 ZNF576Q9H609 170 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.39□□□□□ -1.39
SCN1A-204ENST00000423058 CHRNA9Q9UGM1 479 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 COPS3Q9UNS2 423 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 FZD7O75084 574 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 MRPS34P82930 218 aaKnown RBP6.39□□□□□ -1.39
SCN1A-204ENST00000423058 KEAP1Q14145 624 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 BTLAQ7Z6A9 289 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 CDC20BQ86Y33 519 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 TMEM139Q8IV31 216 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 NHLRC2Q8NBF2 726 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 SDR9C7Q8NEX9 313 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 BRIX1Q8TDN6 353 aaKnown RBP6.39□□□□□ -1.39
SCN1A-204ENST00000423058 RAB3CQ96E17 227 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 OR11A1Q9GZK7 315 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 DNMT3BQ9UBC3 853 aaKnown RBP6.39□□□□□ -1.39
SCN1A-204ENST00000423058 TBX10O75333 385 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 PSMB3P49720 205 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 WDR5P61964 334 aaKnown RBP6.39□□□□□ -1.39
SCN1A-204ENST00000423058 UNC50Q53HI1 259 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 C9orf135Q5VTT2 229 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 SFRP4Q6FHJ7 346 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-204ENST00000423058 OR5M10Q6IEU7 315 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 METAP1DQ6UB28 335 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-204ENST00000423058 UBALD2Q8IYN6 164 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 GJC3Q8NFK1 279 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 B3GNT7Q8NFL0 401 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 ELP4Q96EB1 424 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 COQ10AQ96MF6 247 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 RTL8AQ9BWD3 113 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 TMEM9BQ9NQ34 198 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 CLEC1BQ9P126 229 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 SMCHD1A6NHR9 2005 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms