RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 CRB3Q9BUF7 120 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 RBM24Q9BX46 236 aaKnown RBP5.68□□□□□ -1.5
SCN1A-203ENST00000409050 KDM4FA0A1W2PPD8 638 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 TNFRSF10CO14798 259 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 GLCEO94923 617 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 GM2AP17900 193 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 DPP4P27487 766 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 TACR3P29371 465 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 EVI2BP34910 448 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 TRHRP34981 398 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-203ENST00000409050 PIGAP37287 484 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 SIM1P81133 766 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-203ENST00000409050 ID2Q02363 134 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 ALKBH1Q13686 389 aaKnown RBP5.68□□□□□ -1.5
SCN1A-203ENST00000409050 IHHQ14623 411 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 KCTD11Q693B1 232 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 APOOLQ6UXV4 268 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.68□□□□□ -1.5
SCN1A-203ENST00000409050 PEX11GQ96HA9 241 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 SENP5Q96HI0 755 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-203ENST00000409050 INPP5KQ9BT40 448 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 C1QTNF3Q9BXJ4 246 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 HDAC8Q9BY41 377 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 GSX2Q9BZM3 304 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 SYNPO2LQ9H987 977 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 HS3ST2Q9Y278 367 aa5.68□□□□□ -1.5
SCN1A-203ENST00000409050 HSFX4A0A1B0GTS1 333 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-203ENST00000409050 HSFX3A0A1B0GWH4 333 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-203ENST00000409050 RPS10-NUDT3A0A1W2PQS6 291 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 NKX6-3A6NJ46 265 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 ALX3O95076 343 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 PDGFAP04085 211 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 ZNF728P0DKX0 622 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 CD46P15529 392 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 AADACP22760 399 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 SOX3P41225 446 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 RPL35P42766 123 aaKnown RBP5.67□□□□□ -1.5
SCN1A-203ENST00000409050 RPS10P46783 165 aaKnown RBP5.67□□□□□ -1.5
SCN1A-203ENST00000409050 TPMTP51580 245 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 TAS2R45P59539 299 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 HBA1P69905 142 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 PIGFQ07326 219 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 ZNF252P-AS1Q0IIN9 211 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 PLGLAQ15195 96 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 RNF212Q495C1 297 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 GLYR1Q49A26 553 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-203ENST00000409050 FAM69BQ5VUD6 431 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 PLCXD3Q63HM9 321 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 STEAP1BQ6NZ63 245 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 LIPIQ6XZB0 460 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 USP51Q70EK9 711 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 ZNF485Q8NCK3 441 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 NAXEQ8NCW5 288 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 EDAQ92838 391 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 SEH1LQ96EE3 360 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 ULBP2Q9BZM5 246 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 NOX4Q9NPH5 578 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 EXO1Q9UQ84 846 aaKnown RBP5.67□□□□□ -1.5
SCN1A-203ENST00000409050 KCPQ6ZWJ8 1503 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 XKRY2A2RUG3 117 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 SERINC4A6NH21 518 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 CPNE6O95741 557 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 TFAP2AP05549 437 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 CD14P08571 375 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 SPP1P10451 314 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 FCGR2AP12318 317 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 F3P13726 295 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 POU3F2P20265 443 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-203ENST00000409050 CALCRP30988 508 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 SNCAP37840 140 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 KIR2DL3P43628 341 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 ADPRMQ3LIE5 342 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 ANKRD16Q6P6B7 361 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 PAPD4Q6PIY7 484 aaKnown RBP5.67□□□□□ -1.5
SCN1A-203ENST00000409050 DOK3Q7L591 496 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 NPWQ8N729 165 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 OR10Q1Q8NGQ4 319 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 DUSP19Q8WTR2 217 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 YIPF5Q969M3 257 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 SCLYQ96I15 445 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 UQCC2Q9BRT2 126 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 ADAM19Q9H013 955 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 DUSP22Q9NRW4 184 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 NDUFB11Q9NX14 153 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 RCE1Q9Y256 329 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 KDM4EB2RXH2 506 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-203ENST00000409050 M0R3H8 397 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 TGM1P22735 817 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 ABCD3P28288 659 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 MAGEB1P43366 347 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 NR0B1P51843 470 aaKnown RBP5.67□□□□□ -1.5
SCN1A-203ENST00000409050 RAG2P55895 527 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 H3F3AP84243 136 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 TMEM52BQ4KMG9 183 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 CARD17Q5XLA6 110 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 CATSPERDQ86XM0 798 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 FAM26EQ8N5C1 309 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 CISD2Q8N5K1 135 aaKnown RBP5.67□□□□□ -1.5
SCN1A-203ENST00000409050 OR9K2Q8NGE7 335 aa5.67□□□□□ -1.5
SCN1A-203ENST00000409050 OR10K1Q8NGX5 313 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms