RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 ZNF440Q8IYI8 595 aa9.21□□□□□ -0.94
NEDD8-202ENST00000396828 POC1BQ8TC44 478 aa9.21□□□□□ -0.94
NEDD8-202ENST00000396828 SLC35B4Q969S0 331 aa9.21□□□□□ -0.94
NEDD8-202ENST00000396828 CENPNQ96H22 339 aaPredicted RBP9.21□□□□□ -0.94
NEDD8-202ENST00000396828 C7orf34Q96L11 122 aa9.21□□□□□ -0.94
NEDD8-202ENST00000396828 ZNF300Q96RE9 604 aaPredicted RBP9.21□□□□□ -0.94
NEDD8-202ENST00000396828 ARHGDIGQ99819 225 aa9.21□□□□□ -0.94
NEDD8-202ENST00000396828 PKP2Q99959 881 aa9.21□□□□□ -0.94
NEDD8-202ENST00000396828 TBL1XR1Q9BZK7 514 aa9.21□□□□□ -0.94
NEDD8-202ENST00000396828 VCX3BQ9H321 246 aa9.21□□□□□ -0.94
NEDD8-202ENST00000396828 TMEM185BQ9H7F4 350 aa9.21□□□□□ -0.94
NEDD8-202ENST00000396828 PTGES2Q9H7Z7 377 aa9.21□□□□□ -0.94
NEDD8-202ENST00000396828 HHATLQ9HCP6 504 aa9.21□□□□□ -0.94
NEDD8-202ENST00000396828 SDHAF3Q9NRP4 125 aa9.21□□□□□ -0.94
NEDD8-202ENST00000396828 PLSCR4Q9NRQ2 329 aa9.21□□□□□ -0.94
NEDD8-202ENST00000396828 DNAJB9Q9UBS3 223 aa9.21□□□□□ -0.94
NEDD8-202ENST00000396828 NKX1-2Q9UD57 310 aaPredicted RBP9.21□□□□□ -0.94
NEDD8-202ENST00000396828 KCNE5Q9UJ90 142 aa9.21□□□□□ -0.94
NEDD8-202ENST00000396828 PROCRQ9UNN8 238 aa9.21□□□□□ -0.94
NEDD8-202ENST00000396828 AP4B1Q9Y6B7 739 aa9.21□□□□□ -0.94
NEDD8-202ENST00000396828 FREM1Q5H8C1 2179 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 A0A0J9YW62 118 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 CENPVL1A0A0U1RR11 272 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 A0A1W2PQD3 144 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 M0R3H8 397 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 GTPBP1O00178 669 aaKnown RBP9.2□□□□□ -0.94
NEDD8-202ENST00000396828 AP3D1O14617 1153 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 ADAMDEC1O15204 470 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 NDUFB5O43674 189 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 E2F6O75461 281 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 UBL4AP11441 157 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 UQCRBP14927 111 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 RHCEP18577 417 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 NR1H2P55055 460 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 SMIM11AP58511 58 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 VLDLRP98155 873 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 TRIP10Q15642 601 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 SGCBQ16585 318 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 NRF1Q16656 503 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 GLYR1Q49A26 553 aaPredicted RBP9.2□□□□□ -0.94
NEDD8-202ENST00000396828 OR2T5Q6IEZ7 315 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 STAC2Q6ZMT1 411 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 DEF8Q6ZN54 512 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 LSRQ86X29 649 aaPredicted RBP9.2□□□□□ -0.94
NEDD8-202ENST00000396828 MISPQ8IVT2 679 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 CLIP4Q8N3C7 705 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 OR2T29Q8NH02 315 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 OR10D3Q8NH80 312 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 PHOSPHO1Q8TCT1 267 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 ZNF524Q96C55 264 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 SH3YL1Q96HL8 342 aaPredicted RBP9.2□□□□□ -0.94
NEDD8-202ENST00000396828 AMBRA1Q9C0C7 1298 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 POLR2J2Q9GZM3 115 aaKnown RBP9.2□□□□□ -0.94
NEDD8-202ENST00000396828 POLR2J3Q9H1A7 115 aaKnown RBP9.2□□□□□ -0.94
NEDD8-202ENST00000396828 SEMA6AQ9H2E6 1030 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 REEP1Q9H902 201 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 RLIMQ9NVW2 624 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 NDUFAF4Q9P032 175 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 ENPP4Q9Y6X5 453 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 HIVEP2P31629 2446 aa9.2□□□□□ -0.94
NEDD8-202ENST00000396828 SONP18583 2426 aaKnown RBP9.19□□□□□ -0.94
NEDD8-202ENST00000396828 CLDN24A6NM45 220 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 ALG1L2C9J202 215 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 INAFM1C9JVW0 142 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 LINC01387J3KSC0 135 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 TNFSF11O14788 317 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 ZNF264O43296 627 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 OIP5O43482 229 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 EFNA2O43921 213 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 CXCL13O43927 109 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 SS18L1O75177 396 aaPredicted RBP9.19□□□□□ -0.94
NEDD8-202ENST00000396828 CYP7B1O75881 506 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 CNOT4O95628 575 aaKnown RBP9.19□□□□□ -0.94
NEDD8-202ENST00000396828 FPR1P21462 350 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 PTH2RP49190 550 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 TAS2R41P59536 307 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 RPS3AP61247 264 aaKnown RBP9.19□□□□□ -0.94
NEDD8-202ENST00000396828 GK3PQ14409 553 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 TSC22D1Q15714 1073 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 CD226Q15762 336 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 PLPPR5Q32ZL2 321 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 PRSS57Q6UWY2 283 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 ZNF704Q6ZNC4 412 aaPredicted RBP9.19□□□□□ -0.94
NEDD8-202ENST00000396828 AMIGO2Q86SJ2 522 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 ATG4DQ86TL0 474 aaPredicted RBP9.19□□□□□ -0.94
NEDD8-202ENST00000396828 LILRA2Q8N149 483 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 OR6T1Q8NGN1 323 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 LILRB1Q8NHL6 650 aaPredicted RBP9.19□□□□□ -0.94
NEDD8-202ENST00000396828 ROBO4Q8WZ75 1007 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 EME1Q96AY2 570 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 DTNBP1Q96EV8 351 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 PLPPR2Q96GM1 343 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 MCHR1Q99705 422 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 FNDC11Q9BVV2 318 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 C12orf49Q9H741 205 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 EXOSC3Q9NQT5 275 aaKnown RBP9.19□□□□□ -0.94
NEDD8-202ENST00000396828 MED17Q9NVC6 651 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 TESQ9UGI8 421 aaKnown RBP9.19□□□□□ -0.94
NEDD8-202ENST00000396828 RIMS3Q9UJD0 308 aa9.19□□□□□ -0.94
NEDD8-202ENST00000396828 CHST2Q9Y4C5 530 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms