RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 IL1AP01583 271 aa16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 CELA2AP08217 269 aa16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 GAAP10253 952 aa16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 PTNP21246 168 aa16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 APOBEC1P41238 236 aaKnown RBP16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 CASP3P42574 277 aa16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 CD97P48960 835 aa16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 RORCP51449 518 aa16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 DLX5P56178 289 aa16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 IFITM3Q01628 133 aa16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 AGAP7PQ5VUJ5 663 aa16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 AADACL4Q5VUY2 407 aa16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 H3F3CQ6NXT2 135 aa16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 ARHGAP11AQ6P4F7 1023 aa16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 IL20RBQ6UXL0 311 aa16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 CCDC190Q86UF4 302 aa16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 PHC2Q8IXK0 858 aa16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 LNX2Q8N448 690 aa16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 STK35Q8TDR2 534 aa16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 NKD1Q969G9 470 aa16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 MED18Q9BUE0 208 aa16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 NANSQ9NR45 359 aa16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 H2AFY2Q9P0M6 372 aaPredicted RBP16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 TRAPPC4Q9Y296 219 aa16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 EP300Q09472 2414 aaPredicted RBP16.52■□□□□ 0.24
CCDC88C-203ENST00000389856 FRYLO94915 3013 aa16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 KNTC1P50748 2209 aa16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 TMED7-TICAM2A0A0A6YYA0 188 aa16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 RIIAD1A6NNX1 92 aa16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 A8MVM7 634 aa16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 CDK2AP1O14519 115 aa16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 SURF4O15260 269 aa16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 GMFGO60234 142 aa16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 CH25HO95992 272 aa16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 PTTG1O95997 202 aa16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 MT-ATP6P00846 226 aa16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 RUNX1T1Q06455 604 aa16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 ACSM1Q08AH1 577 aa16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 NXNL2Q5VZ03 156 aa16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 SLC22A10Q63ZE4 541 aa16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 TMPRSS7Q7RTY8 843 aa16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 GID4Q8IVV7 300 aa16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 PSD4Q8NDX1 1056 aa16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 OR4K17Q8NGC6 315 aa16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 OR51A7Q8NH64 312 aa16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 SNRNP27Q8WVK2 155 aaKnown RBP16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 FKRPQ9H9S5 495 aa16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 EXOSC4Q9NPD3 245 aaKnown RBP16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 ZNF229Q9UJW7 825 aa16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 EXOGQ9Y2C4 368 aaKnown RBP16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 TMED7Q9Y3B3 224 aa16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 SPIN1Q9Y657 262 aaPredicted RBP16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 CHCHD2Q9Y6H1 151 aaPredicted RBP16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 DMDP11532 3685 aa16.52■□□□□ 0.23
CCDC88C-203ENST00000389856 IGKV1D-42A0A075B6H8 117 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 TRAV27A0A087WT01 109 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 A0A087WZY1 265 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 TM4SF5O14894 197 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 OR2T1O43869 369 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 TSPAN19P0C672 248 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 FKBP2P26885 142 aaKnown RBP16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 MST1P26927 711 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 NOS3P29474 1203 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 HTR1FP30939 366 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 ETV1P50549 477 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 PSMD7P51665 324 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 CDH11P55287 796 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 DEFA1P59665 94 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 DEFA3P59666 94 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 IL10RAQ13651 578 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 ZNF74Q16587 644 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 DPY19L2P2Q6ZN68 376 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 LYSMD2Q8IV50 215 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 OR4Q3Q8NH05 313 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 OR6S1Q8NH40 331 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 PAQR8Q8TEZ7 354 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 MRGPRX4Q96LA9 322 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 WDFY2Q96P53 400 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 GALNT9Q9HCQ5 603 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 SERINC1Q9NRX5 453 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 SLC6A5Q9Y345 797 aa16.51■□□□□ 0.23
CCDC88C-203ENST00000389856 MUC6Q6W4X9 2439 aa16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 IQCMA0A1B0GVH7 501 aa16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 BHLHE40O14503 412 aa16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 ADAM10O14672 748 aa16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 SLC30A4O14863 429 aa16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 IDH3BO43837 385 aa16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 SUSD5O60279 629 aa16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 AHSA1O95433 338 aa16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 LIPCP11150 499 aa16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 ZNF3P17036 446 aa16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 HK1P19367 917 aa16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 PAICSP22234 425 aaKnown RBP16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 CASRP41180 1078 aa16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 EIF1P41567 113 aaKnown RBP16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 AIMP2Q13155 320 aaKnown RBP16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 MFSD13AQ14CX5 517 aa16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.5■□□□□ 0.23
CCDC88C-203ENST00000389856 SOWAHCQ53LP3 525 aaPredicted RBP16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms