RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 CD14P08571 375 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 CCL3P10147 92 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 IL11P20809 199 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 MSX1P28360 303 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 HTR3AP46098 478 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 FOXK1P85037 733 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 CHAF1BQ13112 559 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 PLPPR5Q32ZL2 321 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 SOWAHCQ53LP3 525 aaPredicted RBP12.47□□□□□ -0.41
PTPRF-202ENST00000372405 NANOGNBQ7Z5D8 188 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 LHFPL3Q86UP9 236 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 FADS6Q8N9I5 356 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 FAM98AQ8NCA5 519 aaKnown RBP12.47□□□□□ -0.41
PTPRF-202ENST00000372405 STK35Q8TDR2 534 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 ASB15Q8WXK1 588 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 TM9SF4Q92544 642 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 NMNAT3Q96T66 252 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 TIMP4Q99727 224 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 OR51E2Q9H255 320 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 EXOSC1Q9Y3B2 195 aaKnown RBP12.47□□□□□ -0.41
PTPRF-202ENST00000372405 MED12Q93074 2177 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 TEX13CA0A0J9YWL9 993 aa12.46□□□□□ -0.41
PTPRF-202ENST00000372405 OR6C68A6NDL8 312 aa12.46□□□□□ -0.41
PTPRF-202ENST00000372405 C21orf140B9A014 251 aa12.46□□□□□ -0.41
PTPRF-202ENST00000372405 FTCDNL1E5RQL4 147 aa12.46□□□□□ -0.41
PTPRF-202ENST00000372405 TP53I11O14683 189 aa12.46□□□□□ -0.41
PTPRF-202ENST00000372405 RAD1O60671 282 aa12.46□□□□□ -0.41
PTPRF-202ENST00000372405 MYL12AP19105 171 aa12.46□□□□□ -0.41
PTPRF-202ENST00000372405 CTXN1P60606 82 aa12.46□□□□□ -0.41
PTPRF-202ENST00000372405 FAM69AQ5T7M9 428 aa12.46□□□□□ -0.41
PTPRF-202ENST00000372405 B3GNTL1Q67FW5 361 aaPredicted RBP12.46□□□□□ -0.41
PTPRF-202ENST00000372405 H3F3CQ6NXT2 135 aa12.46□□□□□ -0.41
PTPRF-202ENST00000372405 TMEM81Q6P7N7 255 aa12.46□□□□□ -0.41
PTPRF-202ENST00000372405 GHDCQ8N2G8 530 aa12.46□□□□□ -0.41
PTPRF-202ENST00000372405 TMEM99Q8N816 258 aa12.46□□□□□ -0.41
PTPRF-202ENST00000372405 SLC25A36Q96CQ1 311 aa12.46□□□□□ -0.41
PTPRF-202ENST00000372405 ARL5BQ96KC2 179 aa12.46□□□□□ -0.41
PTPRF-202ENST00000372405 SECISBP2Q96T21 854 aaKnown RBP12.46□□□□□ -0.41
PTPRF-202ENST00000372405 JAM3Q9BX67 310 aa12.46□□□□□ -0.41
PTPRF-202ENST00000372405 GPR87Q9BY21 358 aa12.46□□□□□ -0.41
PTPRF-202ENST00000372405 NMNAT2Q9BZQ4 307 aa12.46□□□□□ -0.41
PTPRF-202ENST00000372405 SDHAF3Q9NRP4 125 aa12.46□□□□□ -0.41
PTPRF-202ENST00000372405 ERVK13-1Q9NX77 482 aa12.46□□□□□ -0.41
PTPRF-202ENST00000372405 TNFRSF10DQ9UBN6 386 aa12.46□□□□□ -0.41
PTPRF-202ENST00000372405 KLHL21Q9UJP4 597 aa12.46□□□□□ -0.41
PTPRF-202ENST00000372405 PTPRBP23467 1997 aa12.46□□□□□ -0.42
PTPRF-202ENST00000372405 SLC22A31A6NKX4 558 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 CCRL2O00421 344 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 SLC22A1O15245 554 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 IDH3BO43837 385 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 AIREO43918 545 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 MT-ATP6P00846 226 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 CDK4P11802 303 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 APEHP13798 732 aaKnown RBP12.45□□□□□ -0.42
PTPRF-202ENST00000372405 APOBEC1P41238 236 aaKnown RBP12.45□□□□□ -0.42
PTPRF-202ENST00000372405 CDKN2AP42771 156 aaKnown RBP12.45□□□□□ -0.42
PTPRF-202ENST00000372405 WNT4P56705 351 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 SNTA1Q13424 505 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 ANKDD1AQ495B1 522 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 SLC25A53Q5H9E4 307 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 OR51L1Q8NGJ5 315 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 ADAMTS17Q8TE56 1095 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 PAQR8Q8TEZ7 354 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 SMAP2Q8WU79 429 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-202ENST00000372405 PSMF1Q92530 271 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 TSPAN32Q96QS1 320 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 RNF167Q9H6Y7 350 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 ADGRL4Q9HBW9 690 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 IL17BQ9UHF5 180 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 FOXD2O60548 495 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-202ENST00000372405 TXNDC12O95881 172 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 LALBAP00709 142 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 ICAM2P13598 275 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 PAICSP22234 425 aaKnown RBP12.45□□□□□ -0.42
PTPRF-202ENST00000372405 GRPRP30550 384 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 SLC16A1P53985 500 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 RPS7P62081 194 aaKnown RBP12.45□□□□□ -0.42
PTPRF-202ENST00000372405 MLLT11Q13015 90 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-202ENST00000372405 ATP1A4Q13733 1029 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 SLC6A19Q695T7 634 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 MAMDC2Q7Z304 686 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-202ENST00000372405 MDGA2Q7Z553 956 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 LSM14AQ8ND56 463 aaKnown RBP12.45□□□□□ -0.42
PTPRF-202ENST00000372405 GATAD2BQ8WXI9 593 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 ANGPTL4Q9BY76 406 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 ASB6Q9NWX5 421 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 HAO2Q9NYQ3 351 aa12.45□□□□□ -0.42
PTPRF-202ENST00000372405 C12orf71A8MTZ7 269 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 G3V3Y1 287 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 STMND1H3BQB6 276 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 SERPINI2O75830 405 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 DXOO77932 396 aaKnown RBP12.44□□□□□ -0.42
PTPRF-202ENST00000372405 BCL10O95999 233 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 HIST1H2ABP04908 130 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 SERPINA7P05543 415 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 MRPL3P09001 348 aaKnown RBP12.44□□□□□ -0.42
PTPRF-202ENST00000372405 SBK2P0C263 348 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 TCEA1P23193 301 aaKnown RBP12.44□□□□□ -0.42
PTPRF-202ENST00000372405 SDHAP31040 664 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 ATP6V1E1P36543 226 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms