RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 RCVRNP35243 200 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 EPHA4P54764 986 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 CLDN20P56880 219 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 NXPH1P58417 271 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 CEP78Q5JTW2 689 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 LINC01590Q5TEZ4 76 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 LEG1Q6P5S2 330 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 SYT9Q86SS6 491 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 ADIPOR1Q96A54 375 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 LCORQ96JN0 433 aaPredicted RBP19■□□□□ 0.63
CCDC88B-203ENST00000359902 MARVELD1Q9BSK0 173 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 ZCCHC4Q9H5U6 513 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 RANGRFQ9HD47 186 aaPredicted RBP19■□□□□ 0.63
CCDC88B-203ENST00000359902 NANSQ9NR45 359 aa19■□□□□ 0.63
CCDC88B-203ENST00000359902 DHCR7Q9UBM7 475 aaKnown RBP19■□□□□ 0.63
CCDC88B-203ENST00000359902 FRG2CA6NGY1 282 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 GLCEO94923 617 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 DDAH2O95865 285 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 UCHL1P09936 223 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 EDNRAP25101 427 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 PSMB10P40306 273 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 OR1D5P58170 312 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 LTBQ06643 244 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 CCDC58Q4VC31 144 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 PRAMEF17Q5VTA0 474 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 FAM122BQ7Z309 247 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 GPR135Q8IZ08 494 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 ZNF721Q8TF20 911 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 UPRTQ96BW1 309 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 OR1F2PQ96R84 312 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 ABHD1Q96SE0 405 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 ADOQ96SZ5 270 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 PDCD1LG2Q9BQ51 273 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 MMP25Q9NPA2 562 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 USP34Q70CQ2 3546 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 FAM171A2A8MVW0 826 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 FZD7O75084 574 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 SERPINI2O75830 405 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 CD14P08571 375 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 RPL6Q02878 288 aaKnown RBP18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 UBXN2BQ14CS0 331 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 OR5H6Q8NGV6 325 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 TRIM63Q969Q1 353 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 FYTTD1Q96QD9 318 aaKnown RBP18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 ALG12Q9BV10 488 aa18.99■□□□□ 0.63
CCDC88B-203ENST00000359902 NOTOA8MTQ0 251 aa18.98■□□□□ 0.63
CCDC88B-203ENST00000359902 GATBO75879 557 aaKnown RBP18.98■□□□□ 0.63
CCDC88B-203ENST00000359902 ARL6IP5O75915 188 aa18.98■□□□□ 0.63
CCDC88B-203ENST00000359902 ASAH2BP0C7U1 165 aa18.98■□□□□ 0.63
CCDC88B-203ENST00000359902 EPXP11678 715 aa18.98■□□□□ 0.63
CCDC88B-203ENST00000359902 POU3F3P20264 500 aaPredicted RBP18.98■□□□□ 0.63
CCDC88B-203ENST00000359902 EFNA3P52797 238 aa18.98■□□□□ 0.63
CCDC88B-203ENST00000359902 HSD11B2P80365 405 aa18.98■□□□□ 0.63
CCDC88B-203ENST00000359902 PRR22Q8IZ63 422 aa18.98■□□□□ 0.63
CCDC88B-203ENST00000359902 C1orf216Q8TAB5 229 aa18.98■□□□□ 0.63
CCDC88B-203ENST00000359902 RFT1Q96AA3 541 aa18.98■□□□□ 0.63
CCDC88B-203ENST00000359902 OR14A2Q96R54 314 aa18.98■□□□□ 0.63
CCDC88B-203ENST00000359902 RTN4RQ9BZR6 473 aa18.98■□□□□ 0.63
CCDC88B-203ENST00000359902 PCED1AQ9H1Q7 454 aa18.98■□□□□ 0.63
CCDC88B-203ENST00000359902 TTYH1Q9H313 450 aaPredicted RBP18.98■□□□□ 0.63
CCDC88B-203ENST00000359902 RPRD1BQ9NQG5 326 aaKnown RBP18.98■□□□□ 0.63
CCDC88B-203ENST00000359902 ALG5Q9Y673 324 aa18.98■□□□□ 0.63
CCDC88B-203ENST00000359902 MPDZO75970 2070 aa18.98■□□□□ 0.63
CCDC88B-203ENST00000359902 ATF1P18846 271 aa18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 AGFG1P52594 562 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 HSF2Q03933 536 aa18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 GPR176Q14439 515 aa18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 ALG10Q5BKT4 473 aa18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 UNQ9370/PRO34162Q6UXP9 181 aa18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 SDR16C5Q8N3Y7 309 aa18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 EXD3Q8N9H8 876 aa18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 MVB12AQ96EY5 273 aa18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 MRPL48Q96GC5 212 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 MFRPQ9BY79 579 aa18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 RGS13O14921 159 aa18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 FLRT2O43155 660 aa18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 APEHP13798 732 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 CSNK1EP49674 416 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 SLC25A1P53007 311 aa18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 CTXN1P60606 82 aa18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 CFHR1Q03591 330 aa18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 ASB18Q6ZVZ8 466 aa18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 OR1L3Q8NH93 324 aa18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 KTI12Q96EK9 354 aaPredicted RBP18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 TSSK2Q96PF2 358 aa18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 SMAD5Q99717 465 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 NUDT9Q9BW91 350 aa18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 BEX2Q9BXY8 128 aa18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 MRTO4Q9UKD2 239 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 ZNF346Q9UL40 294 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-203ENST00000359902 IGHV1OR21-1A0A087WYE8 117 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 A0A0B4J203 849 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 PRR32B1ATL7 298 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 IDSB3KWA1 339 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 ICOSLGO75144 302 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 SLC43A1O75387 559 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 AHCYP23526 432 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 TACR3P29371 465 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 UQCRC1P31930 480 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms