RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 C3P1Q6ZMU1 363 aa13.74□□□□□ -0.21
COL17A1-201ENST00000353479 NDUFAF7Q7L592 441 aa13.74□□□□□ -0.21
COL17A1-201ENST00000353479 PIWIL3Q7Z3Z3 882 aaKnown RBP13.74□□□□□ -0.21
COL17A1-201ENST00000353479 BPHLQ86WA6 291 aaPredicted RBP13.74□□□□□ -0.21
COL17A1-201ENST00000353479 DNAJC22Q8N4W6 341 aa13.74□□□□□ -0.21
COL17A1-201ENST00000353479 ARSGQ96EG1 525 aa13.74□□□□□ -0.21
COL17A1-201ENST00000353479 C1orf198Q9H425 327 aa13.74□□□□□ -0.21
COL17A1-201ENST00000353479 MOKQ9UQ07 419 aa13.74□□□□□ -0.21
COL17A1-201ENST00000353479 CNOT4O95628 575 aaKnown RBP13.73□□□□□ -0.21
COL17A1-201ENST00000353479 PRSS3P35030 304 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 MOB3CQ70IA8 216 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 YRDCQ86U90 279 aaKnown RBP13.73□□□□□ -0.21
COL17A1-201ENST00000353479 MORN4Q8NDC4 146 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 ABHD5Q8WTS1 349 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 GATA6Q92908 595 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 OBP2BQ9NPH6 170 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 PLEKHJ1Q9NW61 149 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 REV1Q9UBZ9 1251 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 SOCS6O14544 535 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 LCN1P31025 176 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 TBCEQ15813 527 aaPredicted RBP13.73□□□□□ -0.21
COL17A1-201ENST00000353479 GRK1Q15835 563 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 BCDIN3DQ7Z5W3 292 aaKnown RBP13.73□□□□□ -0.21
COL17A1-201ENST00000353479 KDM8Q8N371 416 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 SMRP1Q8NCR6 262 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 OR6Q1Q8NGQ2 317 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 GOT1L1Q8NHS2 421 aaPredicted RBP13.73□□□□□ -0.21
COL17A1-201ENST00000353479 ANKRD19PQ9H560 264 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 NTNG1Q9Y2I2 539 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 FCMRO60667 390 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 AKR7A3O95154 331 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 PPICP45877 212 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 FAM69AQ5T7M9 428 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 CNIH2Q6PI25 160 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 DPY19L4Q7Z388 723 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 RASD2Q96D21 266 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 ZNF175Q9Y473 711 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 COL11A1P12107 1806 aaPredicted RBP13.73□□□□□ -0.21
COL17A1-201ENST00000353479 PPM1DO15297 605 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 MAKP20794 623 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 GABRR1P24046 479 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 MMP11P24347 488 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 PTH2RP49190 550 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 NOVA1P51513 510 aaKnown RBP13.73□□□□□ -0.21
COL17A1-201ENST00000353479 MECP2P51608 486 aaKnown RBP13.73□□□□□ -0.21
COL17A1-201ENST00000353479 PUDPQ08623 228 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 MLLT11Q13015 90 aaPredicted RBP13.73□□□□□ -0.21
COL17A1-201ENST00000353479 NKPD1Q17RQ9 610 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 GLYR1Q49A26 553 aaPredicted RBP13.73□□□□□ -0.21
COL17A1-201ENST00000353479 SLC22A6Q4U2R8 563 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 VHLLQ6RSH7 139 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 LINC00346Q8IVM7 164 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 SIMC1Q8NDZ2 872 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 ZNF587Q96SQ5 575 aaPredicted RBP13.73□□□□□ -0.21
COL17A1-201ENST00000353479 CACNG6Q9BXT2 260 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 CHST8Q9H2A9 424 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 PTPRZ1P23471 2315 aaPredicted RBP13.73□□□□□ -0.21
COL17A1-201ENST00000353479 CNTRLQ7Z7A1 2325 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 OR6C76A6NM76 312 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 UPK1AO00322 258 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 ARHGAP33O14559 1287 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 CSO75390 466 aaKnown RBP13.73□□□□□ -0.21
COL17A1-201ENST00000353479 TNFSF4P23510 183 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 CA5AP35218 305 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 PLEKHN1Q494U1 663 aaPredicted RBP13.73□□□□□ -0.21
COL17A1-201ENST00000353479 FAM219BQ5XKK7 198 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 COLQQ9Y215 455 aaPredicted RBP13.73□□□□□ -0.21
COL17A1-201ENST00000353479 RHBDD3Q9Y3P4 386 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 V9GY05 133 aa13.73□□□□□ -0.21
COL17A1-201ENST00000353479 ISPDA4D126 451 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 H7C417 338 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 PTHP01270 115 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 CD14P08571 375 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 ZNF806P0C7X5 589 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 KCTD20Q7Z5Y7 419 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 IL17RDQ8NFM7 739 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 SYNPRQ8TBG9 265 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 HRASLS5Q96KN8 279 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 ZNF700Q9H0M5 742 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 TAS2R8Q9NYW2 309 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 UBE2J1Q9Y385 318 aaPredicted RBP13.72□□□□□ -0.21
COL17A1-201ENST00000353479 EEF1E1-BLOC1S5C9J1V9 151 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 ICOSLGO75144 302 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 TRIM23P36406 574 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 SRSF5Q13243 272 aaKnown RBP13.72□□□□□ -0.21
COL17A1-201ENST00000353479 PCGF3Q3KNV8 242 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 NXNL2Q5VZ03 156 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 RPL22L1Q6P5R6 122 aaKnown RBP13.72□□□□□ -0.21
COL17A1-201ENST00000353479 ADGRF3Q8IZF5 1079 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 C12orf49Q9H741 205 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 FAM86C1Q9NVL1 165 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 ARL6IP1Q15041 203 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 TBRG1Q3YBR2 411 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 PM20D2Q8IYS1 436 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 SLC15A4Q8N697 577 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 NT5CQ8TCD5 201 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 OR2A14Q96R47 310 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 ST6GALNAC5Q9BVH7 336 aa13.72□□□□□ -0.21
COL17A1-201ENST00000353479 PAPOLGQ9BWT3 736 aaKnown RBP13.72□□□□□ -0.21
COL17A1-201ENST00000353479 TRIM64A6NGJ6 449 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms