RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 ZNF587Q96SQ5 575 aaPredicted RBP14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 ZNF426Q9BUY5 554 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 FOXD3Q9UJU5 478 aaPredicted RBP14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 ENPP4Q9Y6X5 453 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 ADGRG4Q8IZF6 3080 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 GPR171O14626 319 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 FFAR1O14842 300 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 COX6B1P14854 86 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 RBM34P42696 430 aaKnown RBP14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 P2RY4P51582 365 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 UGT2B15P54855 530 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 MS4A2Q01362 244 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 GABPB1Q06547 395 aaPredicted RBP14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 LTBQ06643 244 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 SLC17A1Q14916 467 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 MFSD13AQ14CX5 517 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 STK32CQ86UX6 486 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 OR9K2Q8NGE7 335 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 OR6S1Q8NH40 331 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 TMEM239Q8WW34 195 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 ASB9Q96DX5 294 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 C7orf34Q96L11 122 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 ASPNQ9BXN1 380 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 SLC19A3Q9BZV2 496 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 RASD1Q9Y272 281 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 NOSIPQ9Y314 301 aaKnown RBP14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 FAM32AQ9Y421 112 aaKnown RBP14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 FZD7O75084 574 aa14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 DNAJC8O75937 253 aaPredicted RBP14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 ATP5HO75947 161 aa14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 STAMBPO95630 424 aa14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 CH25HO95992 272 aa14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 POU2F1P14859 743 aa14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 NQO1P15559 274 aaKnown RBP14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 IGFBP2P18065 325 aa14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 FUT4P22083 530 aa14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 RASSF2P50749 326 aa14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 VLDLRP98155 873 aa14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 IL1RL1Q01638 556 aa14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 TRAM2Q15035 370 aa14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 MTX3Q5HYI7 312 aa14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 ZNF787Q6DD87 383 aa14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 LCN8Q6JVE9 175 aa14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 TFAP2EQ6VUC0 442 aa14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 TSEN54Q7Z6J9 526 aaKnown RBP14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 ZNF100Q8IYN0 542 aa14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 PFN4Q8NHR9 129 aa14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 MCUR1Q96AQ8 359 aa14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 HS6ST2Q96MM7 605 aa14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 SF3B5Q9BWJ5 86 aaKnown RBP14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 ENKD1Q9H0I2 346 aa14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 MEPEQ9NQ76 525 aaPredicted RBP14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 NDUFAF4Q9P032 175 aa14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 CORINQ9Y5Q5 1042 aa14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 FLVCR1Q9Y5Y0 555 aa14.11□□□□□ -0.15
CCDC28A-201ENST00000332797 ENO4A6NNW6 628 aa14.1□□□□□ -0.15
CCDC28A-201ENST00000332797 PIP5K1CO60331 668 aa14.1□□□□□ -0.15
CCDC28A-201ENST00000332797 DIRAS1O95057 198 aa14.1□□□□□ -0.15
CCDC28A-201ENST00000332797 PRSS23O95084 383 aa14.1□□□□□ -0.15
CCDC28A-201ENST00000332797 VAMP5O95183 116 aa14.1□□□□□ -0.15
CCDC28A-201ENST00000332797 MT-ATP6P00846 226 aa14.1□□□□□ -0.15
CCDC28A-201ENST00000332797 SEMG1P04279 462 aa14.1□□□□□ -0.15
CCDC28A-201ENST00000332797 EDNRAP25101 427 aa14.1□□□□□ -0.15
CCDC28A-201ENST00000332797 CD79BP40259 229 aa14.1□□□□□ -0.15
CCDC28A-201ENST00000332797 OR3A2P47893 321 aa14.1□□□□□ -0.15
CCDC28A-201ENST00000332797 PMS2P3Q13401 168 aa14.1□□□□□ -0.15
CCDC28A-201ENST00000332797 ZNF74Q16587 644 aa14.1□□□□□ -0.15
CCDC28A-201ENST00000332797 CASP12Q6UXS9 341 aa14.1□□□□□ -0.15
CCDC28A-201ENST00000332797 H1FNTQ75WM6 255 aaPredicted RBP14.1□□□□□ -0.15
CCDC28A-201ENST00000332797 KIF18BQ86Y91 864 aa14.1□□□□□ -0.15
CCDC28A-201ENST00000332797 KDM8Q8N371 416 aa14.1□□□□□ -0.15
CCDC28A-201ENST00000332797 LRGUKQ96M69 825 aa14.1□□□□□ -0.15
CCDC28A-201ENST00000332797 SEPHS2Q99611 448 aa14.1□□□□□ -0.15
CCDC28A-201ENST00000332797 SPOCK3Q9BQ16 436 aa14.1□□□□□ -0.15
CCDC28A-201ENST00000332797 KLHL4Q9C0H6 718 aa14.1□□□□□ -0.15
CCDC28A-201ENST00000332797 MAN2C1Q9NTJ4 1040 aa14.1□□□□□ -0.15
CCDC28A-201ENST00000332797 B3GALT5Q9Y2C3 310 aa14.1□□□□□ -0.15
CCDC28A-201ENST00000332797 MED31Q9Y3C7 131 aa14.1□□□□□ -0.15
CCDC28A-201ENST00000332797 TCRBV5S2A0A599 114 aa14.09□□□□□ -0.15
CCDC28A-201ENST00000332797 RRP9O43818 475 aaKnown RBP14.09□□□□□ -0.15
CCDC28A-201ENST00000332797 MRPL33O75394 65 aaKnown RBP14.09□□□□□ -0.15
CCDC28A-201ENST00000332797 MT-ND1P03886 318 aa14.09□□□□□ -0.15
CCDC28A-201ENST00000332797 FABP3P05413 133 aa14.09□□□□□ -0.15
CCDC28A-201ENST00000332797 UMPSP11172 480 aa14.09□□□□□ -0.15
CCDC28A-201ENST00000332797 ITGA2P17301 1181 aa14.09□□□□□ -0.15
CCDC28A-201ENST00000332797 RHCEP18577 417 aa14.09□□□□□ -0.15
CCDC28A-201ENST00000332797 FAM27E3Q08E93 113 aa14.09□□□□□ -0.15
CCDC28A-201ENST00000332797 BEND4Q6ZU67 534 aa14.09□□□□□ -0.15
CCDC28A-201ENST00000332797 DMRTC2Q8IXT2 367 aaPredicted RBP14.09□□□□□ -0.15
CCDC28A-201ENST00000332797 SCAIQ8N9R8 606 aa14.09□□□□□ -0.15
CCDC28A-201ENST00000332797 ACBD4Q8NC06 268 aa14.09□□□□□ -0.15
CCDC28A-201ENST00000332797 ADPRHL1Q8NDY3 354 aa14.09□□□□□ -0.15
CCDC28A-201ENST00000332797 APH1AQ96BI3 265 aa14.09□□□□□ -0.15
CCDC28A-201ENST00000332797 ZNF385AQ96PM9 386 aaKnown RBP14.09□□□□□ -0.15
CCDC28A-201ENST00000332797 CADM1Q9BY67 442 aaKnown RBP14.09□□□□□ -0.15
CCDC28A-201ENST00000332797 TRIM15Q9C019 465 aa14.09□□□□□ -0.15
CCDC28A-201ENST00000332797 FKRPQ9H9S5 495 aa14.09□□□□□ -0.15
CCDC28A-201ENST00000332797 NMNAT1Q9HAN9 279 aaPredicted RBP14.09□□□□□ -0.15
CCDC28A-201ENST00000332797 NANSQ9NR45 359 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms