RNA–Protein interactions for RNA: ENST00000331563.6

PKP3-201, Transcript of plakophilin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PKP3, Length 2,809 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP3-201ENST00000331563 UBE2E3Q969T4 207 aa16.71■□□□□ 0.27
PKP3-201ENST00000331563 SLC25A28Q96A46 364 aa16.71■□□□□ 0.27
PKP3-201ENST00000331563 TMEM41AQ96HV5 264 aa16.71■□□□□ 0.27
PKP3-201ENST00000331563 RIOK2Q9BVS4 552 aaKnown RBP16.71■□□□□ 0.27
PKP3-201ENST00000331563 PBX4Q9BYU1 374 aa16.71■□□□□ 0.27
PKP3-201ENST00000331563 ZNF106Q9H2Y7 1883 aaKnown RBP16.71■□□□□ 0.27
PKP3-201ENST00000331563 GLOD5A6NK44 160 aa16.71■□□□□ 0.27
PKP3-201ENST00000331563 C1orf105O95561 183 aa16.71■□□□□ 0.27
PKP3-201ENST00000331563 UBBP0CG47 229 aa16.71■□□□□ 0.27
PKP3-201ENST00000331563 UBCP0CG48 685 aaKnown RBP16.71■□□□□ 0.27
PKP3-201ENST00000331563 RD3LP0DJH9 198 aa16.71■□□□□ 0.27
PKP3-201ENST00000331563 VSIG10L2P0DP72 767 aa16.71■□□□□ 0.27
PKP3-201ENST00000331563 BMP7P18075 431 aa16.71■□□□□ 0.27
PKP3-201ENST00000331563 NCBP2P52298 156 aaKnown RBP eCLIP16.71■□□□□ 0.272e-6■□□□□ 8.3
PKP3-201ENST00000331563 PCBP4P57723 403 aaKnown RBP16.71■□□□□ 0.27
PKP3-201ENST00000331563 RPS27AP62979 156 aaKnown RBP16.71■□□□□ 0.27
PKP3-201ENST00000331563 UBA52P62987 128 aaKnown RBP16.71■□□□□ 0.27
PKP3-201ENST00000331563 SMCO1Q147U7 214 aa16.71■□□□□ 0.27
PKP3-201ENST00000331563 ZNF546Q86UE3 836 aa16.71■□□□□ 0.27
PKP3-201ENST00000331563 OR2AK2Q8NG84 335 aa16.71■□□□□ 0.27
PKP3-201ENST00000331563 DIO2Q92813 273 aa16.71■□□□□ 0.27
PKP3-201ENST00000331563 S100A16Q96FQ6 103 aaKnown RBP16.71■□□□□ 0.27
PKP3-201ENST00000331563 LRIG1Q96JA1 1093 aa16.71■□□□□ 0.27
PKP3-201ENST00000331563 SLC25A18Q9H1K4 315 aa16.71■□□□□ 0.27
PKP3-201ENST00000331563 BARX1Q9HBU1 254 aaPredicted RBP16.71■□□□□ 0.27
PKP3-201ENST00000331563 FBXL3Q9UKT7 428 aa16.71■□□□□ 0.27
PKP3-201ENST00000331563 A0A1B0GWJ7 208 aa16.7■□□□□ 0.26
PKP3-201ENST00000331563 TMEM200CA6NKL6 621 aa16.7■□□□□ 0.26
PKP3-201ENST00000331563 CLN5O75503 358 aa16.7■□□□□ 0.26
PKP3-201ENST00000331563 ERAL1O75616 437 aaKnown RBP16.7■□□□□ 0.26
PKP3-201ENST00000331563 MPGP29372 298 aa16.7■□□□□ 0.26
PKP3-201ENST00000331563 RPE65Q16518 533 aa16.7■□□□□ 0.26
PKP3-201ENST00000331563 KLHL26Q53HC5 615 aa16.7■□□□□ 0.26
PKP3-201ENST00000331563 TMEM220Q6QAJ8 160 aa16.7■□□□□ 0.26
PKP3-201ENST00000331563 LNX2Q8N448 690 aa16.7■□□□□ 0.26
PKP3-201ENST00000331563 TMEM68Q96MH6 324 aa16.7■□□□□ 0.26
PKP3-201ENST00000331563 PLEKHA1Q9HB21 404 aa16.7■□□□□ 0.26
PKP3-201ENST00000331563 KLHL28Q9NXS3 571 aa16.7■□□□□ 0.26
PKP3-201ENST00000331563 RASL12Q9NYN1 266 aa16.7■□□□□ 0.26
PKP3-201ENST00000331563 ANKRD20A5PA0PJZ0 165 aa16.7■□□□□ 0.26
PKP3-201ENST00000331563 OR2W5A6NFC9 320 aa16.7■□□□□ 0.26
PKP3-201ENST00000331563 GYPBP06028 91 aa16.7■□□□□ 0.26
PKP3-201ENST00000331563 CLUP10909 449 aa16.7■□□□□ 0.26
PKP3-201ENST00000331563 TYRP1P17643 537 aa16.7■□□□□ 0.26
PKP3-201ENST00000331563 LUMP51884 338 aaPredicted RBP16.7■□□□□ 0.26
PKP3-201ENST00000331563 C4orf46Q504U0 113 aa16.7■□□□□ 0.26
PKP3-201ENST00000331563 TEX30Q5JUR7 227 aa16.7■□□□□ 0.26
PKP3-201ENST00000331563 IL17FQ96PD4 163 aa16.7■□□□□ 0.26
PKP3-201ENST00000331563 TEAD3Q99594 435 aa16.7■□□□□ 0.26
PKP3-201ENST00000331563 MCHR1Q99705 422 aa16.7■□□□□ 0.26
PKP3-201ENST00000331563 DPH1Q9BZG8 443 aa16.7■□□□□ 0.26
PKP3-201ENST00000331563 OR52D1Q9H346 318 aa16.7■□□□□ 0.26
PKP3-201ENST00000331563 DHCR7Q9UBM7 475 aaKnown RBP16.7■□□□□ 0.26
PKP3-201ENST00000331563 DMRT1Q9Y5R6 373 aa16.7■□□□□ 0.26
PKP3-201ENST00000331563 TCF20Q9UGU0 1960 aaKnown RBP16.7■□□□□ 0.26
PKP3-201ENST00000331563 TMEM218A2RU14 115 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 SLC22A31A6NKX4 558 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 PAK4O96013 591 aaPredicted RBP16.69■□□□□ 0.26
PKP3-201ENST00000331563 HMGN2P05204 90 aaKnown RBP16.69■□□□□ 0.26
PKP3-201ENST00000331563 DDX6P26196 483 aaKnown RBP eCLIP16.69■□□□□ 0.261e-12■■■■□ 24.7
PKP3-201ENST00000331563 ADH7P40394 386 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 FAM78AQ5JUQ0 283 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 DMKNQ6E0U4 476 aaPredicted RBP16.69■□□□□ 0.26
PKP3-201ENST00000331563 SKA3Q8IX90 412 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 DMRTC2Q8IXT2 367 aaPredicted RBP16.69■□□□□ 0.26
PKP3-201ENST00000331563 CYB561A3Q8NBI2 242 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 VN1R2Q8NFZ6 395 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 SMPDL3BQ92485 455 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 RAB7BQ96AH8 199 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 SLC41A3Q96GZ6 507 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 PPP1R16AQ96I34 528 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 GLIPR2Q9H4G4 154 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 YBX2Q9Y2T7 364 aaKnown RBP16.69■□□□□ 0.26
PKP3-201ENST00000331563 KNL1Q8NG31 2342 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 PLXNB3Q9ULL4 1909 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 DOCK9Q9BZ29 2069 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 FAM86C2PA6NEL3 165 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 ADH5P11766 374 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 TIMP2P16035 220 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 EIF2S3P41091 472 aaKnown RBP16.69■□□□□ 0.26
PKP3-201ENST00000331563 HCCSP53701 268 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 PDZK1IP1Q13113 114 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 HABP2Q14520 560 aaPredicted RBP16.69■□□□□ 0.26
PKP3-201ENST00000331563 KHDRBS2Q5VWX1 349 aaKnown RBP16.69■□□□□ 0.26
PKP3-201ENST00000331563 KLHDC8AQ8IYD2 350 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 ARMC10Q8N2F6 343 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 MUC20Q8N307 709 aaPredicted RBP16.69■□□□□ 0.26
PKP3-201ENST00000331563 SYNPRQ8TBG9 265 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 C16orf58Q96GQ5 468 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 ZNF471Q9BX82 626 aaPredicted RBP16.69■□□□□ 0.26
PKP3-201ENST00000331563 KCNE3Q9Y6H6 103 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 KANTRA0A1W2PQU2 76 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 SMAD9O15198 467 aaKnown RBP16.69■□□□□ 0.26
PKP3-201ENST00000331563 SBK2P0C263 348 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 RPA2P15927 270 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 MGMTP16455 207 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 ANXA11P50995 505 aaKnown RBP16.69■□□□□ 0.26
PKP3-201ENST00000331563 P2RX1P51575 399 aa16.69■□□□□ 0.26
PKP3-201ENST00000331563 COL9A2Q14055 689 aaPredicted RBP16.69■□□□□ 0.26
PKP3-201ENST00000331563 BEX5Q5H9J7 111 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms