RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ANKFN1Q8N957 763 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 AKR7LQ8NHP1 331 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 TRMT10AQ8TBZ6 339 aaKnown RBP2.35□□□□□ -2.03
HMGB1-201ENST00000326004 EMG1Q92979 244 aaKnown RBP2.35□□□□□ -2.03
HMGB1-201ENST00000326004 TPD52L3Q96J77 140 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 C7orf34Q96L11 122 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 C12orf66Q96MD2 445 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 TECTBQ96PL2 329 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 RIT2Q99578 217 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 OMDQ99983 421 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 CCDC77Q9BR77 488 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 CHIAQ9BZP6 476 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 NAT10Q9H0A0 1025 aaKnown RBP2.35□□□□□ -2.03
HMGB1-201ENST00000326004 MAGT1Q9H0U3 335 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 ASB8Q9H765 288 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 METTL7AQ9H8H3 244 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 APMAPQ9HDC9 416 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 NUDT15Q9NV35 164 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 MARCH5Q9NX47 278 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 B3GNT2Q9NY97 397 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 ANAPC11Q9NYG5 84 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 ZNF221Q9UK13 617 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 ANGPTL2Q9UKU9 493 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 SBF2Q86WG5 1849 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 KANK1Q14678 1352 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 KIAA0232Q92628 1395 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 BAHCC1Q9P281 2608 aa2.35□□□□□ -2.03
HMGB1-201ENST00000326004 HFM1A2PYH4 1435 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 EEA1Q15075 1411 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 ARHGAP31Q2M1Z3 1444 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 PEAK1Q9H792 1746 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 SZT2Q5T011 3432 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 TUBAL3A6NHL2 446 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 E7ESA3 106 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 HCN1O60741 890 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 RNH1P13489 461 aaKnown RBP2.34□□□□□ -2.03
HMGB1-201ENST00000326004 ZNF44P15621 663 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 CYP2B6P20813 491 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 YWHABP31946 246 aaKnown RBP2.34□□□□□ -2.03
HMGB1-201ENST00000326004 BTDP43251 543 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 WNT4P56705 351 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 MXD4Q14582 209 aaPredicted RBP2.34□□□□□ -2.03
HMGB1-201ENST00000326004 SYPL1Q16563 259 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 EXOC3L2Q2M3D2 409 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 OTPQ5XKR4 325 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 SMIM5Q71RC9 77 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 KIAA1328Q86T90 577 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 TPRA1Q86W33 373 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 VSTM4Q8IW00 320 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 NRMQ8IXM6 262 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 ZNF683Q8IZ20 524 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 LRRC43Q8N309 656 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 SVOPLQ8N434 492 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 SYT14Q8NB59 555 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 STXBP6Q8NFX7 210 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 BRSK1Q8TDC3 778 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 TCTEX1D2Q8WW35 142 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 FAM3CQ92520 227 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 MRPS31Q92665 395 aaKnown RBP2.34□□□□□ -2.03
HMGB1-201ENST00000326004 RPL3LQ92901 407 aaKnown RBP2.34□□□□□ -2.03
HMGB1-201ENST00000326004 SH3YL1Q96HL8 342 aaPredicted RBP2.34□□□□□ -2.03
HMGB1-201ENST00000326004 MS4A14Q96JA4 679 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 IMMP1LQ96LU5 166 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 SLC35A5Q9BS91 424 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 TUBGCP2Q9BSJ2 902 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 TMEM43Q9BTV4 400 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 GPR61Q9BZJ8 451 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 NCOR1P1Q9H4R4 102 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 SMYD3Q9H7B4 428 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 ZDHHC11Q9H8X9 412 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 FN3KRPQ9HA64 309 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 ELOVL3Q9HB03 270 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 PLSCR3Q9NRY6 295 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 CD274Q9NZQ7 290 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 WARS2Q9UGM6 360 aaKnown RBP2.34□□□□□ -2.03
HMGB1-201ENST00000326004 SCML2Q9UQR0 700 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 RASD1Q9Y272 281 aa2.34□□□□□ -2.03
HMGB1-201ENST00000326004 CAB39Q9Y376 341 aaPredicted RBP2.34□□□□□ -2.03
HMGB1-201ENST00000326004 THSD7BQ9C0I4 1608 aa2.34□□□□□ -2.04
HMGB1-201ENST00000326004 ARHGAP21Q5T5U3 1957 aa2.34□□□□□ -2.04
HMGB1-201ENST00000326004 SBNO1A3KN83 1393 aa2.34□□□□□ -2.04
HMGB1-201ENST00000326004 PHF3Q92576 2039 aaKnown RBP2.34□□□□□ -2.04
HMGB1-201ENST00000326004 SCN2AQ99250 2005 aa2.34□□□□□ -2.04
HMGB1-201ENST00000326004 QSER1Q2KHR3 1735 aa2.34□□□□□ -2.04
HMGB1-201ENST00000326004 COL6A3P12111 3177 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 ARHGEF5Q12774 1597 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 FAM231BA6NCW3 169 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 METTL21EPA6NDL7 271 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 HELTA6NFD8 242 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 ZNF716A6NP11 495 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 E9PBE3 544 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 G3V4G9 280 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 H0Y9J4 135 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 BTN3A3O00478 584 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 ARPC3O15145 178 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 EMC8O43402 210 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 MED7O43513 233 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 PRKYO43930 277 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 MMP23AO75900 390 aa2.33□□□□□ -2.04
HMGB1-201ENST00000326004 BBOX1O75936 387 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms