RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 BTBD2Q9BX70 525 aa11.89□□□□□ -0.51
SNX1-214ENST00000625244 MRPL37Q9BZE1 423 aaKnown RBP11.89□□□□□ -0.51
SNX1-214ENST00000625244 VIPAS39Q9H9C1 493 aa11.89□□□□□ -0.51
SNX1-214ENST00000625244 SSU72Q9NP77 194 aaKnown RBP11.89□□□□□ -0.51
SNX1-214ENST00000625244 KCNK9Q9NPC2 374 aa11.89□□□□□ -0.51
SNX1-214ENST00000625244 TMEM45AQ9NWC5 275 aa11.89□□□□□ -0.51
SNX1-214ENST00000625244 DYNC2H1Q8NCM8 4307 aaKnown RBP11.88□□□□□ -0.51
SNX1-214ENST00000625244 A0A096LPE4 126 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 ARPC4-TTLL3A0A0A6YYG9 625 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 IGHV2OR16-5A0A0B4J2B6 119 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 A0A1W2PPZ6 126 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 M0R233 179 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 TIMM23O14925 209 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 TM9SF1O15321 606 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 ZNF264O43296 627 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 ULK1O75385 1050 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 HSPA4LO95757 839 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 IGKV3-15P01624 115 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 KRT6AP02538 564 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 KRT6BP04259 564 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 IMPDH1P20839 514 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 GATA3P23771 443 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 ALDH3B1P43353 468 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 KRT6CP48668 564 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 PRKAA2P54646 552 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 KRTAP10-3P60369 221 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 H3F3AP84243 136 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 MVKQ03426 396 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 SNTB2Q13425 540 aaKnown RBP11.88□□□□□ -0.51
SNX1-214ENST00000625244 SAXO2Q658L1 398 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 KRT80Q6KB66 452 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 CDC73Q6P1J9 531 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 SPATC1Q76KD6 591 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 CCNYL1Q8N7R7 359 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 ZNF614Q8N883 585 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 TCP10LQ8TDR4 215 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 SLC25A43Q8WUT9 341 aaPredicted RBP11.88□□□□□ -0.51
SNX1-214ENST00000625244 CDS1Q92903 461 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 CIDECQ96AQ7 238 aaPredicted RBP11.88□□□□□ -0.51
SNX1-214ENST00000625244 ZBTB9Q96C00 473 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 MS4A4EQ96PG1 132 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 GPA33Q99795 319 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 THUMPD3Q9BV44 507 aaKnown RBP11.88□□□□□ -0.51
SNX1-214ENST00000625244 ZNF416Q9BWM5 594 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 HOXD1Q9GZZ0 328 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 MS4A5Q9H3V2 200 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 OXSMQ9NWU1 459 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 SIRT5Q9NXA8 310 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 NUP50Q9UKX7 468 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 EMCNQ9ULC0 261 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 CMAHPQ9Y471 501 aa11.88□□□□□ -0.51
SNX1-214ENST00000625244 SACSQ9NZJ4 4579 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 NPIPB9F8W1W9 429 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 H3BQF6 201 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 EIF4E2O60573 245 aaKnown RBP11.87□□□□□ -0.51
SNX1-214ENST00000625244 DNAJA2O60884 412 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 TSPAN15O95858 294 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 GSNP06396 782 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 SBK3P0C264 359 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 NEFHP12036 1026 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 ATP6V1C1P21283 382 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 PAX7P23759 505 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 EVX1P49640 407 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 OR2B6P58173 313 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 MRPS11P82912 194 aaKnown RBP11.87□□□□□ -0.51
SNX1-214ENST00000625244 DAG1Q14118 895 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 SLC17A1Q14916 467 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 BEAN1Q3B7T3 259 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 KLF17Q5JT82 389 aaPredicted RBP11.87□□□□□ -0.51
SNX1-214ENST00000625244 ZNF678Q5SXM1 525 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 LIPMQ5VYY2 423 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 ANKRD26P1Q6NSI1 321 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 TMEM151AQ8N4L1 468 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 FAM169BQ8N8A8 192 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 ZIC4Q8N9L1 334 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 POMGNT2Q8NAT1 580 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 ST8SIA1Q92185 356 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 RAB39BQ96DA2 213 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 L3HYPDHQ96EM0 354 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 AURKBQ96GD4 344 aaPredicted RBP11.87□□□□□ -0.51
SNX1-214ENST00000625244 TMEM237Q96Q45 408 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 C1QTNF3Q9BXJ4 246 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 OR11A1Q9GZK7 315 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 NELFAQ9H3P2 528 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 TMBIM4Q9HC24 238 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 ACER3Q9NUN7 267 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 DTNAQ9Y4J8 743 aa11.87□□□□□ -0.51
SNX1-214ENST00000625244 G3V2L1 256 aa11.86□□□□□ -0.51
SNX1-214ENST00000625244 G3V4G9 280 aa11.86□□□□□ -0.51
SNX1-214ENST00000625244 DNPH1O43598 174 aa11.86□□□□□ -0.51
SNX1-214ENST00000625244 CRCPO75575 148 aa11.86□□□□□ -0.51
SNX1-214ENST00000625244 CYP7B1O75881 506 aa11.86□□□□□ -0.51
SNX1-214ENST00000625244 IGHV2-5P01817 119 aa11.86□□□□□ -0.51
SNX1-214ENST00000625244 UBL4AP11441 157 aa11.86□□□□□ -0.51
SNX1-214ENST00000625244 ATP12AP54707 1039 aa11.86□□□□□ -0.51
SNX1-214ENST00000625244 DNAJB13P59910 316 aa11.86□□□□□ -0.51
SNX1-214ENST00000625244 CLCQ05315 142 aa11.86□□□□□ -0.51
SNX1-214ENST00000625244 MAD2L1BPQ15013 274 aaPredicted RBP11.86□□□□□ -0.51
SNX1-214ENST00000625244 ATP6AP1LQ52LC2 224 aa11.86□□□□□ -0.51
SNX1-214ENST00000625244 VAX1Q5SQQ9 334 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms