RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 VEGFDO43915 354 aa12.98□□□□□ -0.33
LDB3-209ENST00000623056 PRAMEF2O60811 474 aa12.98□□□□□ -0.33
LDB3-209ENST00000623056 C6P13671 934 aa12.98□□□□□ -0.33
LDB3-209ENST00000623056 RPA2P15927 270 aa12.98□□□□□ -0.33
LDB3-209ENST00000623056 MAOBP27338 520 aa12.98□□□□□ -0.33
LDB3-209ENST00000623056 MAPK3P27361 379 aaPredicted RBP12.98□□□□□ -0.33
LDB3-209ENST00000623056 MAGEB1P43366 347 aa12.98□□□□□ -0.33
LDB3-209ENST00000623056 TAS2R20P59543 309 aa12.98□□□□□ -0.33
LDB3-209ENST00000623056 GMFBP60983 142 aa12.98□□□□□ -0.33
LDB3-209ENST00000623056 EIPR1Q53HC9 387 aa12.98□□□□□ -0.33
LDB3-209ENST00000623056 MFSD12Q6NUT3 480 aa12.98□□□□□ -0.33
LDB3-209ENST00000623056 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.98□□□□□ -0.33
LDB3-209ENST00000623056 KCT2Q8NC54 265 aa12.98□□□□□ -0.33
LDB3-209ENST00000623056 OR7G2Q8NG99 324 aa12.98□□□□□ -0.33
LDB3-209ENST00000623056 OR10K1Q8NGX5 313 aa12.98□□□□□ -0.33
LDB3-209ENST00000623056 SNX33Q8WV41 574 aa12.98□□□□□ -0.33
LDB3-209ENST00000623056 USB1Q9BQ65 265 aaKnown RBP12.98□□□□□ -0.33
LDB3-209ENST00000623056 SLC6A5Q9Y345 797 aa12.98□□□□□ -0.33
LDB3-209ENST00000623056 V9GY05 133 aa12.98□□□□□ -0.33
LDB3-209ENST00000623056 TBC1D3EA0A087X179 549 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 CD1AP06126 327 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 RAB40ALP0C0E4 278 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 OR2T7P0C7T2 308 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 ADH7P40394 386 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 RPL35P42766 123 aaKnown RBP12.97□□□□□ -0.33
LDB3-209ENST00000623056 SORDQ00796 357 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 MC2RQ01718 297 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 FGL1Q08830 312 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 STX4Q12846 297 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 CEBPEQ15744 281 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 ZNF613Q6PF04 617 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 ZNF765Q7L2R6 523 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 MUC20Q8N307 709 aaPredicted RBP12.97□□□□□ -0.33
LDB3-209ENST00000623056 OR51L1Q8NGJ5 315 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 OR2T27Q8NH04 317 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 RAB40AQ8WXH6 277 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 HAVCR1Q96D42 359 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 CNN2Q99439 309 aaKnown RBP12.97□□□□□ -0.33
LDB3-209ENST00000623056 PBX4Q9BYU1 374 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 SCPEP1Q9HB40 452 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 MEPEQ9NQ76 525 aaPredicted RBP12.97□□□□□ -0.33
LDB3-209ENST00000623056 ZNF780BQ9Y6R6 833 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 A0A1B0GW55 424 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 RLN1P04808 185 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 DUX4L2P0CJ85 424 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 DUX4L3P0CJ86 424 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 DUX4L4P0CJ87 422 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 DUX4L5P0CJ88 424 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 DUX4L6P0CJ89 424 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 DUX4L7P0CJ90 424 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 HOXA1P49639 335 aaPredicted RBP12.97□□□□□ -0.33
LDB3-209ENST00000623056 AKR1D1P51857 326 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 PRDX1Q06830 199 aaKnown RBP12.97□□□□□ -0.33
LDB3-209ENST00000623056 LGALS3BPQ08380 585 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 DUSP8Q13202 625 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 RBMS2Q15434 407 aaKnown RBP12.97□□□□□ -0.33
LDB3-209ENST00000623056 LY6G5CQ5SRR4 150 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 TSSK4Q6SA08 328 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 SLC35F2Q8IXU6 374 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 BPIFCQ8NFQ6 507 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 PHYHIPQ92561 330 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 ARSGQ96EG1 525 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 MS4A4EQ96PG1 132 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 SPHK2Q9NRA0 654 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 DUX4Q9UBX2 424 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 MED31Q9Y3C7 131 aa12.97□□□□□ -0.33
LDB3-209ENST00000623056 TMEM272A0A1B0GTI8 110 aa12.96□□□□□ -0.33
LDB3-209ENST00000623056 GPRIN2O60269 458 aa12.96□□□□□ -0.33
LDB3-209ENST00000623056 ILF3Q12906 894 aaKnown RBP eCLIP12.96□□□□□ -0.33
LDB3-209ENST00000623056 DUSP5Q16690 384 aa12.96□□□□□ -0.33
LDB3-209ENST00000623056 ARHGAP11BQ3KRB8 267 aa12.96□□□□□ -0.33
LDB3-209ENST00000623056 AMZ1Q400G9 498 aa12.96□□□□□ -0.33
LDB3-209ENST00000623056 FAM74A1Q5RGS3 127 aa12.96□□□□□ -0.33
LDB3-209ENST00000623056 MRPL2Q5T653 305 aaKnown RBP12.96□□□□□ -0.33
LDB3-209ENST00000623056 LRRN1Q6UXK5 716 aa12.96□□□□□ -0.33
LDB3-209ENST00000623056 DNTTIP1Q9H147 329 aa12.96□□□□□ -0.33
LDB3-209ENST00000623056 XKR8Q9H6D3 395 aa12.96□□□□□ -0.33
LDB3-209ENST00000623056 FKRPQ9H9S5 495 aa12.96□□□□□ -0.33
LDB3-209ENST00000623056 BARX1Q9HBU1 254 aaPredicted RBP12.96□□□□□ -0.33
LDB3-209ENST00000623056 TAS2R3Q9NYW6 316 aa12.96□□□□□ -0.33
LDB3-209ENST00000623056 USP36Q9P275 1121 aaKnown RBP12.96□□□□□ -0.33
LDB3-209ENST00000623056 ICAM5Q9UMF0 924 aa12.96□□□□□ -0.33
LDB3-209ENST00000623056 IFNGP01579 166 aa12.96□□□□□ -0.34
LDB3-209ENST00000623056 THBS1P07996 1170 aa12.96□□□□□ -0.34
LDB3-209ENST00000623056 TMIGD3P0DMS9 266 aaPredicted RBP12.96□□□□□ -0.34
LDB3-209ENST00000623056 MNDAP41218 407 aa12.96□□□□□ -0.34
LDB3-209ENST00000623056 ERVK-25P63136 954 aa12.96□□□□□ -0.34
LDB3-209ENST00000623056 SDR9C7Q8NEX9 313 aa12.96□□□□□ -0.34
LDB3-209ENST00000623056 OR2L5Q8NG80 312 aa12.96□□□□□ -0.34
LDB3-209ENST00000623056 OR52E2Q8NGJ4 325 aa12.96□□□□□ -0.34
LDB3-209ENST00000623056 OR4C16Q8NGL9 310 aa12.96□□□□□ -0.34
LDB3-209ENST00000623056 OR2A1Q8NGT9 310 aa12.96□□□□□ -0.34
LDB3-209ENST00000623056 TNFAIP8L1Q8WVP5 186 aa12.96□□□□□ -0.34
LDB3-209ENST00000623056 NSMAFQ92636 917 aa12.96□□□□□ -0.34
LDB3-209ENST00000623056 MIB2Q96AX9 1013 aa12.96□□□□□ -0.34
LDB3-209ENST00000623056 TNFRSF13CQ96RJ3 184 aa12.96□□□□□ -0.34
LDB3-209ENST00000623056 SDF2Q99470 211 aa12.96□□□□□ -0.34
LDB3-209ENST00000623056 C2orf42Q9NWW7 574 aa12.96□□□□□ -0.34
LDB3-209ENST00000623056 RASL12Q9NYN1 266 aa12.96□□□□□ -0.34
LDB3-209ENST00000623056 WSB2Q9NYS7 404 aaPredicted RBP12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms