RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 SHISA9B4DS77 424 aa16.71■□□□□ 0.27
CDX1-202ENST00000616154 DNPH1O43598 174 aa16.71■□□□□ 0.27
CDX1-202ENST00000616154 UBOX5O94941 541 aa16.71■□□□□ 0.27
CDX1-202ENST00000616154 CD8AP01732 235 aa16.71■□□□□ 0.27
CDX1-202ENST00000616154 HTR3AP46098 478 aa16.71■□□□□ 0.27
CDX1-202ENST00000616154 MAP2K6P52564 334 aa16.71■□□□□ 0.27
CDX1-202ENST00000616154 PDK3Q15120 406 aa16.71■□□□□ 0.27
CDX1-202ENST00000616154 RGNQ15493 299 aa16.71■□□□□ 0.27
CDX1-202ENST00000616154 ZSWIM7Q19AV6 140 aa16.71■□□□□ 0.27
CDX1-202ENST00000616154 PAGE3Q5JUK9 113 aa16.71■□□□□ 0.27
CDX1-202ENST00000616154 MRPL2Q5T653 305 aaKnown RBP16.71■□□□□ 0.27
CDX1-202ENST00000616154 RNF220Q5VTB9 566 aa16.71■□□□□ 0.27
CDX1-202ENST00000616154 SLC2A7Q6PXP3 512 aa16.71■□□□□ 0.27
CDX1-202ENST00000616154 CXXC5Q7LFL8 322 aaKnown RBP16.71■□□□□ 0.27
CDX1-202ENST00000616154 ZC3HAV1Q7Z2W4 902 aaKnown RBP16.71■□□□□ 0.27
CDX1-202ENST00000616154 MSRB3Q8IXL7 192 aa16.71■□□□□ 0.27
CDX1-202ENST00000616154 PEX5LQ8IYB4 626 aa16.71■□□□□ 0.27
CDX1-202ENST00000616154 POU5F2Q8N7G0 328 aa16.71■□□□□ 0.27
CDX1-202ENST00000616154 ZNF775Q96BV0 537 aaPredicted RBP16.71■□□□□ 0.27
CDX1-202ENST00000616154 RAD21L1Q9H4I0 556 aa16.71■□□□□ 0.27
CDX1-202ENST00000616154 ALG2Q9H553 416 aa16.71■□□□□ 0.27
CDX1-202ENST00000616154 BCL2L10Q9HD36 194 aa16.71■□□□□ 0.27
CDX1-202ENST00000616154 A4GALTQ9NPC4 353 aa16.71■□□□□ 0.27
CDX1-202ENST00000616154 FAIMQ9NVQ4 179 aa16.71■□□□□ 0.27
CDX1-202ENST00000616154 SLC25A37Q9NYZ2 338 aa16.71■□□□□ 0.27
CDX1-202ENST00000616154 NPAP1Q9NZP6 1156 aa16.71■□□□□ 0.27
CDX1-202ENST00000616154 EMC3Q9P0I2 261 aa16.71■□□□□ 0.27
CDX1-202ENST00000616154 LEF1Q9UJU2 399 aaPredicted RBP16.71■□□□□ 0.27
CDX1-202ENST00000616154 SPIN1Q9Y657 262 aaPredicted RBP16.71■□□□□ 0.27
CDX1-202ENST00000616154 STAB1Q9NY15 2570 aa16.71■□□□□ 0.27
CDX1-202ENST00000616154 LOC100653049A0A140TA62 436 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 OR5H1A6NKK0 313 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 SULT2B1O00204 365 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 RAMP1O60894 148 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 KRT34O76011 436 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 IL7RP16871 459 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 GGT1P19440 569 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 CRATP43155 626 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 CDH11P55287 796 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 EPS8Q12929 822 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 BNIP1Q12981 228 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 LIN52Q52LA3 116 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 HMGN2P46Q86SG4 172 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 ADGRG3Q86Y34 549 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 ZNF440Q8IYI8 595 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 ZNF100Q8IYN0 542 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 ZNF433Q8N7K0 673 aaPredicted RBP16.7■□□□□ 0.26
CDX1-202ENST00000616154 SPATA3Q8NHX4 192 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 NSL1Q96IY1 281 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 BARX1Q9HBU1 254 aaPredicted RBP16.7■□□□□ 0.26
CDX1-202ENST00000616154 CTPS2Q9NRF8 586 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 HDGFL3Q9Y3E1 203 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 ALPK2Q86TB3 2170 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 A0A0G2JPF8 293 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 HNRNPCL2B2RXH8 293 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 HNRNPCL3B7ZW38 293 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 CLIC1O00299 241 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 EBAG9O00559 213 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 AP3D1O14617 1153 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 ANGPT2O15123 496 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 ZNF208O43345 1280 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 HNRNPCL1O60812 293 aaKnown RBP16.7■□□□□ 0.26
CDX1-202ENST00000616154 PMS2P2O95744 297 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 NPPAP01160 153 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 TP53P04637 393 aaPredicted RBP16.7■□□□□ 0.26
CDX1-202ENST00000616154 BCHEP06276 602 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 HNRNPCL4P0DMR1 293 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 CALB2P22676 271 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 RYKP34925 604 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 SLC1A3P43003 542 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 FBXW9Q5XUX1 488 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 REP15Q6BDI9 236 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 C8orf82Q6P1X6 216 aaPredicted RBP16.7■□□□□ 0.26
CDX1-202ENST00000616154 DLEU7Q6UYE1 221 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 HACD2Q6Y1H2 254 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 OR52P1PQ8NH57 321 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 ZNF563Q8TA94 476 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 SLC35B4Q969S0 331 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 TMEM19Q96HH6 336 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 RADILQ96JH8 1075 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 HS6ST2Q96MM7 605 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 ADAM19Q9H013 955 aa16.7■□□□□ 0.26
CDX1-202ENST00000616154 CFAP73A6NFT4 308 aa16.69■□□□□ 0.26
CDX1-202ENST00000616154 ZNF716A6NP11 495 aa16.69■□□□□ 0.26
CDX1-202ENST00000616154 FXYD1O00168 92 aa16.69■□□□□ 0.26
CDX1-202ENST00000616154 ABCD4O14678 606 aa16.69■□□□□ 0.26
CDX1-202ENST00000616154 CD5LO43866 347 aa16.69■□□□□ 0.26
CDX1-202ENST00000616154 NDUFS7O75251 213 aa16.69■□□□□ 0.26
CDX1-202ENST00000616154 IDH2P48735 452 aaKnown RBP16.69■□□□□ 0.26
CDX1-202ENST00000616154 ZNF836Q6ZNA1 936 aa16.69■□□□□ 0.26
CDX1-202ENST00000616154 RCN3Q96D15 328 aa16.69■□□□□ 0.26
CDX1-202ENST00000616154 ZHX1-C8orf76Q96EF9 292 aa16.69■□□□□ 0.26
CDX1-202ENST00000616154 EFCAB1Q9HAE3 211 aa16.69■□□□□ 0.26
CDX1-202ENST00000616154 OSGIN1Q9UJX0 560 aa16.69■□□□□ 0.26
CDX1-202ENST00000616154 GDF2Q9UK05 429 aaPredicted RBP16.69■□□□□ 0.26
CDX1-202ENST00000616154 CHST2Q9Y4C5 530 aa16.69■□□□□ 0.26
CDX1-202ENST00000616154 HEATR1Q9H583 2144 aaKnown RBP16.68■□□□□ 0.26
CDX1-202ENST00000616154 MRASO14807 208 aa16.68■□□□□ 0.26
CDX1-202ENST00000616154 TLX2O43763 284 aaPredicted RBP16.68■□□□□ 0.26
CDX1-202ENST00000616154 NUDT7P0C024 238 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms