RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 FAM230AA0A1W2PPH8 454 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 SMCO3A2RU48 225 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 CHRM4P08173 479 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 IGFBP1P08833 259 aaPredicted RBP13□□□□□ -0.33
CPSF1-212ENST00000616140 EPHA2P29317 976 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 MTNR1BP49286 362 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 TAS2R31P59538 309 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 ABHD17BQ5VST6 288 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 METRNLQ641Q3 311 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 OR13C9Q8NGT0 318 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 ZDHHC5Q9C0B5 715 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 ZNF436Q9C0F3 470 aaPredicted RBP13□□□□□ -0.33
CPSF1-212ENST00000616140 OCEL1Q9H607 264 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 GALNT9Q9HCQ5 603 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 FGF22Q9HCT0 170 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 ATP13A2Q9NQ11 1180 aa13□□□□□ -0.33
CPSF1-212ENST00000616140 TRDV1A0A1B0GX56 115 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 LRIT2A6NDA9 550 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 CPNE6O95741 557 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 TP53P04637 393 aaPredicted RBP12.99□□□□□ -0.33
CPSF1-212ENST00000616140 YPEL5P62699 121 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 HSF5Q4G112 596 aaPredicted RBP12.99□□□□□ -0.33
CPSF1-212ENST00000616140 MEX3BQ6ZN04 569 aaKnown RBP12.99□□□□□ -0.33
CPSF1-212ENST00000616140 LINC00299Q6ZSB3 139 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 NDUFAF7Q7L592 441 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 NLRP8Q86W28 1048 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 RCBTB1Q8NDN9 531 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 FNDC9Q8TBE3 224 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 NXPE3Q969Y0 559 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 ZFP57Q9NU63 452 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 ADAMTSL3P82987 1691 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 ZNF593O00488 134 aaPredicted RBP12.99□□□□□ -0.33
CPSF1-212ENST00000616140 KLK8O60259 260 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 SNRPGP62308 76 aaKnown RBP12.99□□□□□ -0.33
CPSF1-212ENST00000616140 ECH1Q13011 328 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 FCN2Q15485 313 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 CDKN3Q16667 212 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 ALKAL2Q6UX46 152 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 SPPL3Q8TCT6 385 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 VRK1Q99986 396 aaPredicted RBP12.99□□□□□ -0.33
CPSF1-212ENST00000616140 EVA1AQ9H8M9 152 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 NOX4Q9NPH5 578 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 NRIP3Q9NQ35 241 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 GJE1A6NN92 205 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 FAM155AB1AL88 458 aaPredicted RBP12.99□□□□□ -0.33
CPSF1-212ENST00000616140 GALR3O60755 368 aaPredicted RBP12.99□□□□□ -0.33
CPSF1-212ENST00000616140 IFNGR1P15260 489 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 GABRR1P24046 479 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 BDKRB2P30411 391 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 UBE2NP61088 152 aaKnown RBP12.99□□□□□ -0.33
CPSF1-212ENST00000616140 MRPL58Q14197 206 aaKnown RBP12.99□□□□□ -0.33
CPSF1-212ENST00000616140 ZNF385BQ569K4 471 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 RAB11FIP2Q7L804 512 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 OR7G2Q8NG99 324 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 OR6F1Q8NGZ6 308 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 CHST8Q9H2A9 424 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 DHCR7Q9UBM7 475 aaKnown RBP12.99□□□□□ -0.33
CPSF1-212ENST00000616140 PTRH2Q9Y3E5 179 aaKnown RBP12.99□□□□□ -0.33
CPSF1-212ENST00000616140 ITGB4P16144 1822 aa12.99□□□□□ -0.33
CPSF1-212ENST00000616140 TMPRSS11DO60235 418 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 TCRBP04435 133 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 HOXB5P09067 269 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 LPAL2Q16609 132 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 C11orf91Q3C1V1 193 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 C19orf47Q8N9M1 422 aaKnown RBP12.98□□□□□ -0.33
CPSF1-212ENST00000616140 OR52N1Q8NH53 320 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 PSD2Q9BQI7 771 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 OR10A5Q9H207 317 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 TCRBV5S2A0A599 114 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 BRINP1O60477 761 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 TSPAN12O95859 305 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 CHRNB1P11230 501 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 HOXB9P17482 250 aaPredicted RBP12.98□□□□□ -0.33
CPSF1-212ENST00000616140 RPL35P42766 123 aaKnown RBP12.98□□□□□ -0.33
CPSF1-212ENST00000616140 EEF1A1P68104 462 aaKnown RBP12.98□□□□□ -0.33
CPSF1-212ENST00000616140 Q499Y3 187 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 ZMAT1Q5H9K5 638 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 ACSM5Q6NUN0 579 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 CYHR1Q6ZMK1 362 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 CCDC71LQ8N9Z2 235 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 NICN1Q9BSH3 213 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 HDAC8Q9BY41 377 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 THAP10Q9P2Z0 257 aaPredicted RBP12.98□□□□□ -0.33
CPSF1-212ENST00000616140 FBXL2Q9UKC9 423 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 SLC6A14Q9UN76 642 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 EDARQ9UNE0 448 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 TJP1Q07157 1748 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 FTCDNL1E5RQL4 147 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 H3BUI4 141 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 PIP5K1CO60331 668 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 CD14P08571 375 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 IRS1P35568 1242 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 HTR3AP46098 478 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 SEC61A1P61619 476 aaKnown RBP12.98□□□□□ -0.33
CPSF1-212ENST00000616140 DCAF7P61962 342 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 SORDQ00796 357 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 RBMS2Q15434 407 aaKnown RBP12.98□□□□□ -0.33
CPSF1-212ENST00000616140 DUSP5Q16690 384 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 PAQR6Q6TCH4 344 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 OR4M1Q8NGD0 313 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms