RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 EGLN3Q9H6Z9 239 aa13.93□□□□□ -0.18
UPF1-206ENST00000598471 TMEM185BQ9H7F4 350 aa13.93□□□□□ -0.18
UPF1-206ENST00000598471 SLC25A19Q9HC21 320 aa13.93□□□□□ -0.18
UPF1-206ENST00000598471 ACKR4Q9NPB9 350 aa13.93□□□□□ -0.18
UPF1-206ENST00000598471 IMPAD1Q9NX62 359 aa13.93□□□□□ -0.18
UPF1-206ENST00000598471 ALKBH4Q9NXW9 302 aa13.93□□□□□ -0.18
UPF1-206ENST00000598471 IL20Q9NYY1 176 aa13.93□□□□□ -0.18
UPF1-206ENST00000598471 TUBD1Q9UJT1 453 aa13.93□□□□□ -0.18
UPF1-206ENST00000598471 NDRG4Q9ULP0 352 aaKnown RBP13.93□□□□□ -0.18
UPF1-206ENST00000598471 TRAV27A0A087WT01 109 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 ZAR1LA6NP61 321 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 LRRN3E7EW58 273 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 EFNA2O43921 213 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 NDUFB2O95178 105 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 OR6A2O95222 327 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 TP53P04637 393 aaPredicted RBP13.92□□□□□ -0.18
UPF1-206ENST00000598471 ASAH2BP0C7U1 165 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 POU3F2P20265 443 aaPredicted RBP13.92□□□□□ -0.18
UPF1-206ENST00000598471 MYF6P23409 242 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 SFTPDP35247 375 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 GGT2P36268 569 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 CD97P48960 835 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 FOXK1P85037 733 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 MYBPHQ13203 477 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 GINS1Q14691 196 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 OR7A5Q15622 319 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 TMEM176BQ3YBM2 270 aaPredicted RBP13.92□□□□□ -0.18
UPF1-206ENST00000598471 C1QL3Q5VWW1 255 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 SLX4IPQ5VYV7 408 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 SLC6A19Q695T7 634 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 CASP12Q6UXS9 341 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 ASB18Q6ZVZ8 466 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 CHERPQ8IWX8 916 aaKnown RBP13.92□□□□□ -0.18
UPF1-206ENST00000598471 SCAIQ8N9R8 606 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 OR2T33Q8NG76 320 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 OR5J2Q8NH18 312 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 C9orf43Q8TAL5 461 aaPredicted RBP13.92□□□□□ -0.18
UPF1-206ENST00000598471 SAMD8Q96LT4 415 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 KLHL15Q96M94 604 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 MOGAT1Q96PD6 335 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 TNFRSF13CQ96RJ3 184 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 EXO5Q9H790 373 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 BAIAP2Q9UQB8 552 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 B3GNT3Q9Y2A9 372 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 TP53TG5Q9Y2B4 290 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 HIF3AQ9Y2N7 669 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 HSPE1-MOB4S4R3N1 261 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 ZFHX4Q86UP3 3567 aa13.92□□□□□ -0.18
UPF1-206ENST00000598471 LAMA5O15230 3695 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 LIPT2A6NK58 231 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 PTP4A3O75365 173 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 PDGFAP04085 211 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 EPHA2P29317 976 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 GRPRP30550 384 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 GIPRP48546 466 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 GFRA1P56159 465 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 OR2B6P58173 313 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 RPS4XP62701 263 aaKnown RBP13.91□□□□□ -0.18
UPF1-206ENST00000598471 CSNK2A1P68400 391 aaPredicted RBP13.91□□□□□ -0.18
UPF1-206ENST00000598471 SLC35A1P78382 337 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 LTBQ06643 244 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 PMS2P3Q13401 168 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 SGCBQ16585 318 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 CLEC12AQ5QGZ9 265 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 PDSS1Q5T2R2 415 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 ZNF691Q5VV52 312 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 RPUSD3Q6P087 351 aaKnown RBP13.91□□□□□ -0.18
UPF1-206ENST00000598471 USP51Q70EK9 711 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 MARVELD2Q8N4S9 558 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 LRRC17Q8N6Y2 441 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 RBMXL3Q8N7X1 1067 aaKnown RBP13.91□□□□□ -0.18
UPF1-206ENST00000598471 FAM81AQ8TBF8 368 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 SLC39A7Q92504 469 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 MIB2Q96AX9 1013 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 ZHX1-C8orf76Q96EF9 292 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 ARL5BQ96KC2 179 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 MUS81Q96NY9 551 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 SLC38A2Q96QD8 506 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 IFT27Q9BW83 186 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 PLA2G12AQ9BZM1 189 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 LDAHQ9H6V9 325 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 ZDHHC11Q9H8X9 412 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 MCCC2Q9HCC0 563 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 MRPL39Q9NYK5 338 aaKnown RBP13.91□□□□□ -0.18
UPF1-206ENST00000598471 TRAPPC4Q9Y296 219 aa13.91□□□□□ -0.18
UPF1-206ENST00000598471 PCNX3Q9H6A9 2034 aa13.9□□□□□ -0.18
UPF1-206ENST00000598471 CACNA1BQ00975 2339 aa13.9□□□□□ -0.18
UPF1-206ENST00000598471 CNTRLQ7Z7A1 2325 aa13.9□□□□□ -0.18
UPF1-206ENST00000598471 FTCDNL1E5RQL4 147 aa13.9□□□□□ -0.18
UPF1-206ENST00000598471 E9PQ18 207 aa13.9□□□□□ -0.18
UPF1-206ENST00000598471 BLOC1S5-TXNDC5H3BN57 136 aa13.9□□□□□ -0.18
UPF1-206ENST00000598471 SULT2B1O00204 365 aa13.9□□□□□ -0.18
UPF1-206ENST00000598471 MPZL2O60487 215 aa13.9□□□□□ -0.18
UPF1-206ENST00000598471 PMS2P2O95744 297 aa13.9□□□□□ -0.18
UPF1-206ENST00000598471 CLIC3O95833 236 aa13.9□□□□□ -0.18
UPF1-206ENST00000598471 ACTL6AO96019 429 aa13.9□□□□□ -0.18
UPF1-206ENST00000598471 HMGN1P05114 100 aa13.9□□□□□ -0.18
UPF1-206ENST00000598471 IGFBP1P08833 259 aaPredicted RBP13.9□□□□□ -0.18
UPF1-206ENST00000598471 GNAO1P09471 354 aa13.9□□□□□ -0.18
UPF1-206ENST00000598471 RPL4P36578 427 aaKnown RBP13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms