RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 TIGARQ9NQ88 270 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 MRPL39Q9NYK5 338 aaKnown RBP13.75□□□□□ -0.21
TRIM28-209ENST00000597423 TUBD1Q9UJT1 453 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 B3GNT3Q9Y2A9 372 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 SLC6A5Q9Y345 797 aa13.75□□□□□ -0.21
TRIM28-209ENST00000597423 URB1O60287 2271 aaKnown RBP13.75□□□□□ -0.21
TRIM28-209ENST00000597423 MED13Q9UHV7 2174 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 ZC3H12DA2A288 527 aaKnown RBP13.74□□□□□ -0.21
TRIM28-209ENST00000597423 M0R3G1 203 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 SULT2B1O00204 365 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 TAF4O00268 1085 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 IDH3BO43837 385 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 EIF1BO60739 113 aaKnown RBP13.74□□□□□ -0.21
TRIM28-209ENST00000597423 ACTL6AO96019 429 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 ASAH2BP0C7U1 165 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 POU3F2P20265 443 aaPredicted RBP13.74□□□□□ -0.21
TRIM28-209ENST00000597423 MAGEA5P43359 124 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 OR2B6P58173 313 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 B3GALT5-AS1P59052 145 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 CSNK2BP67870 215 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 IL5RAQ01344 420 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 MYBPHQ13203 477 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 OR7A5Q15622 319 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 BCL2A1Q16548 175 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 TMPPEQ6ZT21 453 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 ESPNLQ6ZVH7 1005 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 ASB18Q6ZVZ8 466 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 H1FNTQ75WM6 255 aaPredicted RBP13.74□□□□□ -0.21
TRIM28-209ENST00000597423 KIF18BQ86Y91 864 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 CHERPQ8IWX8 916 aaKnown RBP13.74□□□□□ -0.21
TRIM28-209ENST00000597423 LRRC17Q8N6Y2 441 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 KDF1Q8NAX2 398 aaPredicted RBP13.74□□□□□ -0.21
TRIM28-209ENST00000597423 EXTL1Q92935 676 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 ZHX1-C8orf76Q96EF9 292 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 PLEKHA8Q96JA3 519 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 Q96MT0 163 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 MOGAT1Q96PD6 335 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 NR1H4Q96RI1 486 aaPredicted RBP13.74□□□□□ -0.21
TRIM28-209ENST00000597423 NPAS1Q99742 590 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 NAA11Q9BSU3 229 aaPredicted RBP13.74□□□□□ -0.21
TRIM28-209ENST00000597423 PTDSS2Q9BVG9 487 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 EXO5Q9H790 373 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 ALKBH4Q9NXW9 302 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 B3GALT5Q9Y2C3 310 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 HIF3AQ9Y2N7 669 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 AKAP13Q12802 2813 aa13.74□□□□□ -0.21
TRIM28-209ENST00000597423 HEATR5AQ86XA9 2040 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 TRAV27A0A087WT01 109 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 LIPT2A6NK58 231 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 E9PQ18 207 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 TFECO14948 347 aaPredicted RBP13.73□□□□□ -0.21
TRIM28-209ENST00000597423 DNPH1O43598 174 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 PMS2P2O95744 297 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 CRYABP02511 175 aaKnown RBP13.73□□□□□ -0.21
TRIM28-209ENST00000597423 TP53P04637 393 aaPredicted RBP13.73□□□□□ -0.21
TRIM28-209ENST00000597423 ZNF24P17028 368 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 IL11P20809 199 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 NOS3P29474 1203 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 GRPRP30550 384 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 GRK5P34947 590 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 SFTPDP35247 375 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 RFC3P40938 356 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 FOXK1P85037 733 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 MYBPC1Q00872 1141 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 LTBQ06643 244 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 SGCBQ16585 318 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 ALG10Q5BKT4 473 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 CLEC12AQ5QGZ9 265 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 C1QL3Q5VWW1 255 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 SLC6A19Q695T7 634 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 PTCHD4Q6ZW05 846 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 FAM81AQ8TBF8 368 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 MIB2Q96AX9 1013 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 KLHL15Q96M94 604 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 UBL7Q96S82 380 aaPredicted RBP13.73□□□□□ -0.21
TRIM28-209ENST00000597423 YTHDF1Q9BYJ9 559 aaKnown RBP13.73□□□□□ -0.21
TRIM28-209ENST00000597423 TMEM185BQ9H7F4 350 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 TVP23BQ9NYZ1 205 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 CPAMD8Q8IZJ3 1885 aa13.73□□□□□ -0.21
TRIM28-209ENST00000597423 APC2O95996 2303 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 TRGV5A0A0B4J1U4 118 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 SNTNA6NMZ2 147 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 FTCDNL1E5RQL4 147 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 IMPA2O14732 288 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 SEC14L5O43304 696 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 WISP1O95388 367 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 IFNGP01579 166 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 IGFBP1P08833 259 aaPredicted RBP13.72□□□□□ -0.21
TRIM28-209ENST00000597423 GNAO1P09471 354 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 SFTPCP11686 197 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 APEHP13798 732 aaKnown RBP13.72□□□□□ -0.21
TRIM28-209ENST00000597423 EPHA2P29317 976 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 AQP2P41181 271 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 GFRA1P56159 465 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 CARD18P57730 90 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 RPS4XP62701 263 aaKnown RBP13.72□□□□□ -0.21
TRIM28-209ENST00000597423 ZP4Q12836 540 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 TOP3AQ13472 1001 aaPredicted RBP13.72□□□□□ -0.21
TRIM28-209ENST00000597423 SNAPC1Q16533 368 aa13.72□□□□□ -0.21
TRIM28-209ENST00000597423 PGGHGQ32M88 737 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms