RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 TMEM225Q6GV28 225 aa13.47□□□□□ -0.25
TRIM28-203ENST00000593582 OR7E24Q6IFN5 339 aa13.47□□□□□ -0.25
TRIM28-203ENST00000593582 ARMC8Q8IUR7 673 aa13.47□□□□□ -0.25
TRIM28-203ENST00000593582 ZNF611Q8N823 705 aa13.47□□□□□ -0.25
TRIM28-203ENST00000593582 LSMEM1Q8N8F7 131 aa13.47□□□□□ -0.25
TRIM28-203ENST00000593582 C11orf65Q8NCR3 313 aa13.47□□□□□ -0.25
TRIM28-203ENST00000593582 ELOA3Q8NG57 546 aa13.47□□□□□ -0.25
TRIM28-203ENST00000593582 OR9K2Q8NGE7 335 aa13.47□□□□□ -0.25
TRIM28-203ENST00000593582 AKAP1Q92667 903 aaKnown RBP eCLIP13.47□□□□□ -0.25
TRIM28-203ENST00000593582 ANKRD27Q96NW4 1050 aa13.47□□□□□ -0.25
TRIM28-203ENST00000593582 TMEM120AQ9BXJ8 343 aa13.47□□□□□ -0.25
TRIM28-203ENST00000593582 TRIM2Q9C040 744 aa13.47□□□□□ -0.25
TRIM28-203ENST00000593582 PIF1Q9H611 641 aa13.47□□□□□ -0.25
TRIM28-203ENST00000593582 C12orf10Q9HB07 376 aa13.47□□□□□ -0.25
TRIM28-203ENST00000593582 MRGBPQ9NV56 204 aa13.47□□□□□ -0.25
TRIM28-203ENST00000593582 TPST1O60507 370 aa13.46□□□□□ -0.25
TRIM28-203ENST00000593582 RAD51DO75771 328 aa13.46□□□□□ -0.25
TRIM28-203ENST00000593582 PNMTP11086 282 aa13.46□□□□□ -0.25
TRIM28-203ENST00000593582 FOSL1P15407 271 aa13.46□□□□□ -0.25
TRIM28-203ENST00000593582 GTF2E2P29084 291 aaKnown RBP13.46□□□□□ -0.25
TRIM28-203ENST00000593582 RIPPLY3P57055 190 aa13.46□□□□□ -0.25
TRIM28-203ENST00000593582 MTPNP58546 118 aa13.46□□□□□ -0.25
TRIM28-203ENST00000593582 TGFBR3Q03167 851 aa13.46□□□□□ -0.25
TRIM28-203ENST00000593582 RBBP4Q09028 425 aa13.46□□□□□ -0.25
TRIM28-203ENST00000593582 NFYCQ13952 458 aa13.46□□□□□ -0.25
TRIM28-203ENST00000593582 HSP90B2PQ58FF3 399 aa13.46□□□□□ -0.25
TRIM28-203ENST00000593582 ADAM5Q6NVV9 412 aa13.46□□□□□ -0.25
TRIM28-203ENST00000593582 RETREG3Q86VR2 466 aa13.46□□□□□ -0.25
TRIM28-203ENST00000593582 OR52E4Q8NGH9 312 aa13.46□□□□□ -0.25
TRIM28-203ENST00000593582 MFSD8Q8NHS3 518 aa13.46□□□□□ -0.25
TRIM28-203ENST00000593582 TMEM171Q8WVE6 324 aa13.46□□□□□ -0.25
TRIM28-203ENST00000593582 DNAJA4Q8WW22 397 aaPredicted RBP13.46□□□□□ -0.25
TRIM28-203ENST00000593582 TMEM45BQ96B21 275 aa13.46□□□□□ -0.25
TRIM28-203ENST00000593582 CXorf56Q9H5V9 222 aa13.46□□□□□ -0.25
TRIM28-203ENST00000593582 ZNF446Q9NWS9 450 aa13.46□□□□□ -0.25
TRIM28-203ENST00000593582 SELENONQ9NZV5 590 aa13.46□□□□□ -0.25
TRIM28-203ENST00000593582 MTORP42345 2549 aa13.46□□□□□ -0.26
TRIM28-203ENST00000593582 A0A1B0GWA3 101 aa13.45□□□□□ -0.26
TRIM28-203ENST00000593582 TMCC2O75069 709 aa13.45□□□□□ -0.26
TRIM28-203ENST00000593582 VIMP08670 466 aaKnown RBP13.45□□□□□ -0.26
TRIM28-203ENST00000593582 HTR2AP28223 471 aa13.45□□□□□ -0.26
TRIM28-203ENST00000593582 RPS5P46782 204 aaKnown RBP13.45□□□□□ -0.26
TRIM28-203ENST00000593582 RGS8P57771 180 aaPredicted RBP13.45□□□□□ -0.26
TRIM28-203ENST00000593582 GLIPR1L2Q4G1C9 344 aa13.45□□□□□ -0.26
TRIM28-203ENST00000593582 ALG10BQ5I7T1 473 aa13.45□□□□□ -0.26
TRIM28-203ENST00000593582 Q5PR19 223 aa13.45□□□□□ -0.26
TRIM28-203ENST00000593582 TSPO2Q5TGU0 170 aa13.45□□□□□ -0.26
TRIM28-203ENST00000593582 ULK3Q6PHR2 472 aa13.45□□□□□ -0.26
TRIM28-203ENST00000593582 C5orf46Q6UWT4 87 aa13.45□□□□□ -0.26
TRIM28-203ENST00000593582 C6orf89Q6UWU4 347 aa13.45□□□□□ -0.26
TRIM28-203ENST00000593582 SEZ6L2Q6UXD5 910 aa13.45□□□□□ -0.26
TRIM28-203ENST00000593582 AAED1Q7RTV5 226 aa13.45□□□□□ -0.26
TRIM28-203ENST00000593582 COMTD1Q86VU5 262 aa13.45□□□□□ -0.26
TRIM28-203ENST00000593582 KRTAP1-3Q8IUG1 177 aa13.45□□□□□ -0.26
TRIM28-203ENST00000593582 ZIC4Q8N9L1 334 aa13.45□□□□□ -0.26
TRIM28-203ENST00000593582 SLC25A36Q96CQ1 311 aa13.45□□□□□ -0.26
TRIM28-203ENST00000593582 PERPQ96FX8 193 aa13.45□□□□□ -0.26
TRIM28-203ENST00000593582 RSPO3Q9BXY4 272 aaPredicted RBP13.45□□□□□ -0.26
TRIM28-203ENST00000593582 EVA1AQ9H8M9 152 aa13.45□□□□□ -0.26
TRIM28-203ENST00000593582 TMEM27Q9HBJ8 222 aa13.45□□□□□ -0.26
TRIM28-203ENST00000593582 SLC7A10Q9NS82 523 aa13.45□□□□□ -0.26
TRIM28-203ENST00000593582 FGFR1OP2Q9NVK5 253 aa13.45□□□□□ -0.26
TRIM28-203ENST00000593582 TESQ9UGI8 421 aaKnown RBP13.45□□□□□ -0.26
TRIM28-203ENST00000593582 RASD1Q9Y272 281 aa13.45□□□□□ -0.26
TRIM28-203ENST00000593582 DPRXA6NFQ7 191 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 OR2T1O43869 369 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 KRT33AO76009 404 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 MFN2O95140 757 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 P2RY4P51582 365 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 ARFIP2P53365 341 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 EGR4Q05215 589 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 CYLC2Q14093 348 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-203ENST00000593582 SELPLGQ14242 412 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 GABRA6Q16445 453 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 ZNF672Q499Z4 452 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-203ENST00000593582 FAM91A1Q658Y4 838 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 KLHL17Q6TDP4 642 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 PRSS57Q6UWY2 283 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 TMEM108Q6UXF1 575 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 CREB3L2Q70SY1 520 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 RANBP3LQ86VV4 465 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-203ENST00000593582 PTOV1Q86YD1 416 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 SLC30A8Q8IWU4 369 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 POMGNT2Q8NAT1 580 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 SMYD1Q8NB12 490 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 C1orf162Q8NEQ5 155 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-203ENST00000593582 OR52N5Q8NH56 324 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 RNF217Q8TC41 542 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 FBXW5Q969U6 566 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 KTI12Q96EK9 354 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-203ENST00000593582 SLC47A1Q96FL8 570 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 MUS81Q96NY9 551 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 ZNF385AQ96PM9 386 aaKnown RBP13.44□□□□□ -0.26
TRIM28-203ENST00000593582 PTDSS2Q9BVG9 487 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 GSX2Q9BZM3 304 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 SLCO5A1Q9H2Y9 848 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 KAT8Q9H7Z6 458 aaKnown RBP13.44□□□□□ -0.26
TRIM28-203ENST00000593582 DLL4Q9NR61 685 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 LAMP3Q9UQV4 416 aa13.44□□□□□ -0.26
TRIM28-203ENST00000593582 ROS1P08922 2347 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms