RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 FAM46AQ96IP4 442 aaKnown RBP9.22□□□□□ -0.93
SS18-210ENST00000578700 PLEKHA8Q96JA3 519 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 NODALQ96S42 347 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 DMRTA2Q96SC8 542 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 CCDC90BQ9GZT6 254 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 PLSCR2Q9NRY7 297 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 RYDENQ9NUL5 291 aaKnown RBP9.22□□□□□ -0.93
SS18-210ENST00000578700 RNF6Q9Y252 685 aa9.22□□□□□ -0.93
SS18-210ENST00000578700 FBN3Q75N90 2809 aa9.21□□□□□ -0.93
SS18-210ENST00000578700 A0A0B4J2E0 115 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 A0A1B0GWA3 101 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 A0A1B0GX12 115 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 SH3D21A4FU49 640 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 CCDC160A6NGH7 325 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 UNC119BA6NIH7 251 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 OR6C70A6NIJ9 312 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 PTGES3LE9PB15 166 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 M0R3G1 203 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 NOL3O60936 208 aaKnown RBP9.21□□□□□ -0.94
SS18-210ENST00000578700 PPM1BO75688 479 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 OR6B1O95007 311 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 RCBTB2O95199 551 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 SOX14O95416 240 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 IFI30P13284 250 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 ZNF24P17028 368 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 BMP7P18075 431 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 HTR2AP28223 471 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 ABCD3P28288 659 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 PTGS2P35354 604 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 CDH15P55291 814 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 SLC26A5P58743 744 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 MYBPHQ13203 477 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 GINS1Q14691 196 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 CTU2Q2VPK5 515 aaKnown RBP9.21□□□□□ -0.94
SS18-210ENST00000578700 RNFT1Q5M7Z0 435 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 ZNF468Q5VIY5 522 aaPredicted RBP9.21□□□□□ -0.94
SS18-210ENST00000578700 SLX4IPQ5VYV7 408 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 H3F3CQ6NXT2 135 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 SLC27A4Q6P1M0 643 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 GPR141Q7Z602 305 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 FGD2Q7Z6J4 655 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 SIAH3Q8IW03 269 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 ENTHD1Q8IYW4 607 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 SLC15A4Q8N697 577 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 ZNF441Q8N8Z8 693 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 ACBD4Q8NC06 268 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 NFAM1Q8NET5 270 aaPredicted RBP9.21□□□□□ -0.94
SS18-210ENST00000578700 OR8J1Q8NGP2 316 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 RHOXF1Q8NHV9 184 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 M1APQ8TC57 530 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 TMUB1Q9BVT8 246 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 NDEL1Q9GZM8 345 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 LAT2Q9GZY6 243 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 GSX1Q9H4S2 264 aaPredicted RBP9.21□□□□□ -0.94
SS18-210ENST00000578700 KCNJ16Q9NPI9 418 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 SDHAF3Q9NRP4 125 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 TBC1D23Q9NUY8 699 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 CNIH4Q9P003 139 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 TNFRSF10DQ9UBN6 386 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 REV1Q9UBZ9 1251 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 NPFFR2Q9Y5X5 522 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 DNAJC13O75165 2243 aa9.21□□□□□ -0.94
SS18-210ENST00000578700 NSD1Q96L73 2696 aaPredicted RBP9.2□□□□□ -0.94
SS18-210ENST00000578700 TRIM64A6NGJ6 449 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 ELOA3DA6NLF2 546 aaPredicted RBP9.2□□□□□ -0.94
SS18-210ENST00000578700 EFCAB9A8MZ26 197 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 ALG1L2C9J202 215 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 TP53I11O14683 189 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 TFECO14948 347 aaPredicted RBP9.2□□□□□ -0.94
SS18-210ENST00000578700 HCRTR2O43614 444 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 RGS10O43665 173 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 TSPAN2O60636 221 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 HCN1O60741 890 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 ICOSLGO75144 302 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 SLC25A12O75746 678 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 NEURL1O76050 574 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 NUDT14O95848 222 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 HMGN1P05114 100 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 SAGP10523 405 aaPredicted RBP9.2□□□□□ -0.94
SS18-210ENST00000578700 PGCP20142 388 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 EPHA2P29317 976 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 FMO3P31513 532 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 ACAA2P42765 397 aaKnown RBP9.2□□□□□ -0.94
SS18-210ENST00000578700 OMPP47874 163 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 SNRPGP62308 76 aaKnown RBP9.2□□□□□ -0.94
SS18-210ENST00000578700 PRKCDQ05655 676 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 SKP2Q13309 424 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 TMEM44Q2T9K0 475 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 ELOA3BQ3SY89 546 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 MEDAGQ5VYS4 303 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 TMEM211Q6ICI0 200 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 NUP54Q7Z3B4 507 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 RPS19BP1Q86WX3 136 aaKnown RBP9.2□□□□□ -0.94
SS18-210ENST00000578700 CCDC71Q8IV32 467 aaPredicted RBP9.2□□□□□ -0.94
SS18-210ENST00000578700 SLC43A2Q8N370 569 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 CLDN22Q8N7P3 220 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 GATSQ8NAP1 163 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 APCDD1LQ8NCL9 501 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 ELOA3Q8NG57 546 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 ASB5Q8WWX0 329 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms