RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 PGCP20142 388 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 RPS4Y1P22090 263 aaKnown RBP5.9□□□□□ -1.46
VPS53-213ENST00000572334 CD40P25942 277 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 IL12AP29459 219 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 TTKP33981 857 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 SOAT1P35610 550 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 APOBEC1P41238 236 aaKnown RBP5.9□□□□□ -1.46
VPS53-213ENST00000572334 CDH11P55287 796 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 CHRNEQ04844 493 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 MPP2Q14168 576 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 RCN1Q15293 331 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 GABRA6Q16445 453 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 SMU1Q2TAY7 513 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 PGS1Q32NB8 556 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 SPANXN4Q5MJ08 99 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 FBXW9Q5XUX1 488 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 TNFAIP8L2Q6P589 184 aaPredicted RBP5.9□□□□□ -1.46
VPS53-213ENST00000572334 EIF3MQ7L2H7 374 aaKnown RBP5.9□□□□□ -1.46
VPS53-213ENST00000572334 PATL1Q86TB9 770 aaKnown RBP5.9□□□□□ -1.46
VPS53-213ENST00000572334 P2RY8Q86VZ1 359 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 PHC2Q8IXK0 858 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 FITM2Q8N6M3 262 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 OR52E4Q8NGH9 312 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 SLC25A43Q8WUT9 341 aaPredicted RBP5.9□□□□□ -1.46
VPS53-213ENST00000572334 CNOT9Q92600 299 aaKnown RBP5.9□□□□□ -1.46
VPS53-213ENST00000572334 HTRA1Q92743 480 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 GTPBP3Q969Y2 492 aaKnown RBP5.9□□□□□ -1.46
VPS53-213ENST00000572334 ROPN1LQ96C74 230 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 NEURL3Q96EH8 262 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 NSL1Q96IY1 281 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 PPP1R36Q96LQ0 422 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 SIKE1Q9BRV8 207 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 SLC38A1Q9H2H9 487 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 SSU72Q9NP77 194 aaKnown RBP5.9□□□□□ -1.46
VPS53-213ENST00000572334 NGBQ9NPG2 151 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 FAIMQ9NVQ4 179 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 MALT1Q9UDY8 824 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 CHRNA9Q9UGM1 479 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 HAO1Q9UJM8 370 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 WDR45Q9Y484 360 aa5.9□□□□□ -1.46
VPS53-213ENST00000572334 NBEAL1Q6ZS30 2694 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 PRSS51A0A1B0GVH4 220 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 TMEM120BA0PK00 339 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 TMEM72A0PK05 275 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 ELOA3DA6NLF2 546 aaPredicted RBP5.89□□□□□ -1.47
VPS53-213ENST00000572334 SSX4O60224 188 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 CYP7B1O75881 506 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 TNFAIP8O95379 198 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 CPSF4O95639 269 aaKnown RBP5.89□□□□□ -1.47
VPS53-213ENST00000572334 CHRM4P08173 479 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 UQCRC2P22695 453 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 RYKP34925 604 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 CDKN2CP42773 168 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 ZNF83P51522 516 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 P2RY4P51582 365 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 ESRRGP62508 458 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 CSNK2A1P68400 391 aaPredicted RBP5.89□□□□□ -1.47
VPS53-213ENST00000572334 KCNJ10P78508 379 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 RIPPLY1Q0D2K3 151 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 SLC17A1Q14916 467 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 SYPL1Q16563 259 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 MST1LQ2TV78 715 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 ELOA3BQ3SY89 546 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 COX20Q5RI15 118 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 C6orf52Q5T4I8 152 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 TSPO2Q5TGU0 170 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 FAM91A1Q658Y4 838 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 HMBOX1Q6NT76 420 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 BHLHB9Q6PI77 547 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 GRINAQ7Z429 371 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 PEX5LQ8IYB4 626 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 ZNF100Q8IYN0 542 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 ANKFN1Q8N957 763 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 ZIC4Q8N9L1 334 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 MINDY2Q8NBR6 621 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 ICA1LQ8NDH6 482 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 ELOA3Q8NG57 546 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 OR4A15Q8NGL6 344 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 OR52N5Q8NH56 324 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 XAGE5Q8WWM1 108 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 OIT3Q8WWZ8 545 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 NANOS1Q8WY41 292 aaKnown RBP5.89□□□□□ -1.47
VPS53-213ENST00000572334 TMEM234Q8WY98 164 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 TESCQ96BS2 214 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 MPP4Q96JB8 637 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 PRPF18Q99633 342 aaKnown RBP5.89□□□□□ -1.47
VPS53-213ENST00000572334 SH3GL1Q99961 368 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 DHRS9Q9BPW9 319 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 ECSITQ9BQ95 431 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 INPP5KQ9BT40 448 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 CACNG6Q9BXT2 260 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 RSPO3Q9BXY4 272 aaPredicted RBP5.89□□□□□ -1.47
VPS53-213ENST00000572334 ADAM19Q9H013 955 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 EXOSC3Q9NQT5 275 aaKnown RBP5.89□□□□□ -1.47
VPS53-213ENST00000572334 POLE3Q9NRF9 147 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 YAE1D1Q9NRH1 226 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 SLC7A10Q9NS82 523 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 SLC6A13Q9NSD5 602 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 CBLN4Q9NTU7 201 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 TAS2R16Q9NYV7 291 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms