RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 NPIPB7O75200 414 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 CNOT4O95628 575 aaKnown RBP11.55□□□□□ -0.56
CLK3-224ENST00000568605 PPP3CBP16298 524 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 UGT2B10P36537 528 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 RPS5P46782 204 aaKnown RBP11.55□□□□□ -0.56
CLK3-224ENST00000568605 OR3A2P47893 321 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 TAS2R41P59536 307 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 H3F3AP84243 136 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 FBXW10Q5XX13 1052 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 ZNF474Q6S9Z5 364 aaPredicted RBP11.55□□□□□ -0.56
CLK3-224ENST00000568605 TFAP2EQ6VUC0 442 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 TMEM200AQ86VY9 491 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 CARM1Q86X55 608 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 ZNF100Q8IYN0 542 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 FAM162AQ96A26 154 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 APH1AQ96BI3 265 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 TPD52L3Q96J77 140 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 MPP4Q96JB8 637 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 DACH2Q96NX9 599 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 ZNF300Q96RE9 604 aaPredicted RBP11.55□□□□□ -0.56
CLK3-224ENST00000568605 TMEM43Q9BTV4 400 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 MED18Q9BUE0 208 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 MCCC2Q9HCC0 563 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 ZNF226Q9NYT6 803 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 CRIM1Q9NZV1 1036 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 USP22Q9UPT9 525 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 HEATR1Q9H583 2144 aaKnown RBP11.54□□□□□ -0.56
CLK3-224ENST00000568605 ZNF716A6NP11 495 aa11.54□□□□□ -0.56
CLK3-224ENST00000568605 CASKO14936 926 aa11.54□□□□□ -0.56
CLK3-224ENST00000568605 MRPL33O75394 65 aaKnown RBP11.54□□□□□ -0.56
CLK3-224ENST00000568605 AKR7A3O95154 331 aa11.54□□□□□ -0.56
CLK3-224ENST00000568605 ZNF682O95780 498 aa11.54□□□□□ -0.56
CLK3-224ENST00000568605 EPXP11678 715 aa11.54□□□□□ -0.56
CLK3-224ENST00000568605 CRYBA2P53672 197 aa11.54□□□□□ -0.56
CLK3-224ENST00000568605 CDH12P55289 794 aa11.54□□□□□ -0.56
CLK3-224ENST00000568605 SELENOWP63302 87 aa11.54□□□□□ -0.56
CLK3-224ENST00000568605 FAM27E3Q08E93 113 aa11.54□□□□□ -0.56
CLK3-224ENST00000568605 KRT72Q14CN4 511 aa11.54□□□□□ -0.56
CLK3-224ENST00000568605 SAMD4BQ5PRF9 694 aaKnown RBP11.54□□□□□ -0.56
CLK3-224ENST00000568605 TMEM225Q6GV28 225 aa11.54□□□□□ -0.56
CLK3-224ENST00000568605 CASP12Q6UXS9 341 aa11.54□□□□□ -0.56
CLK3-224ENST00000568605 DEF8Q6ZN54 512 aa11.54□□□□□ -0.56
CLK3-224ENST00000568605 GPAT4Q86UL3 456 aa11.54□□□□□ -0.56
CLK3-224ENST00000568605 TMEM99Q8N816 258 aa11.54□□□□□ -0.56
CLK3-224ENST00000568605 OR6S1Q8NH40 331 aa11.54□□□□□ -0.56
CLK3-224ENST00000568605 GEMIN6Q8WXD5 167 aaKnown RBP11.54□□□□□ -0.56
CLK3-224ENST00000568605 SLC25A36Q96CQ1 311 aa11.54□□□□□ -0.56
CLK3-224ENST00000568605 USB1Q9BQ65 265 aaKnown RBP11.54□□□□□ -0.56
CLK3-224ENST00000568605 RSPO3Q9BXY4 272 aaPredicted RBP11.54□□□□□ -0.56
CLK3-224ENST00000568605 KLHL4Q9C0H6 718 aa11.54□□□□□ -0.56
CLK3-224ENST00000568605 OR10A4Q9H209 315 aa11.54□□□□□ -0.56
CLK3-224ENST00000568605 PARPBPQ9NWS1 579 aa11.54□□□□□ -0.56
CLK3-224ENST00000568605 RPS6KA6Q9UK32 745 aa11.54□□□□□ -0.56
CLK3-224ENST00000568605 RASD1Q9Y272 281 aa11.54□□□□□ -0.56
CLK3-224ENST00000568605 TESMINQ9Y4I5 508 aa11.54□□□□□ -0.56
CLK3-224ENST00000568605 CORINQ9Y5Q5 1042 aa11.54□□□□□ -0.56
CLK3-224ENST00000568605 APCP25054 2843 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 MAST4O15021 2626 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 FTCDNL1E5RQL4 147 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 AKAP8O43823 692 aaKnown RBP11.53□□□□□ -0.56
CLK3-224ENST00000568605 OR5F1O95221 314 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 MT-ATP6P00846 226 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 IFNW1P05000 195 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 NQO1P15559 274 aaKnown RBP11.53□□□□□ -0.56
CLK3-224ENST00000568605 KLK2P20151 261 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 PSMB1P20618 241 aaKnown RBP11.53□□□□□ -0.56
CLK3-224ENST00000568605 IL32P24001 234 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 CCKARP32238 428 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 EGR4Q05215 589 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 SNTB1Q13884 538 aaKnown RBP11.53□□□□□ -0.56
CLK3-224ENST00000568605 P2RY6Q15077 328 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 NPTX1Q15818 432 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 SPATS1Q496A3 300 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 TTC33Q6PID6 262 aaPredicted RBP11.53□□□□□ -0.56
CLK3-224ENST00000568605 Q6ZT83 130 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 NUFIP2Q7Z417 695 aaKnown RBP11.53□□□□□ -0.56
CLK3-224ENST00000568605 CCDC103Q8IW40 242 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 ZNF295-AS1Q8N0V1 137 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 FITM2Q8N6M3 262 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 SCAIQ8N9R8 606 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 STEAP2Q8NFT2 490 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 BCAS4Q8TDM0 211 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 PRR14Q9BWN1 585 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 ASPNQ9BXN1 380 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 HDHD5Q9BXW7 423 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 SLC19A3Q9BZV2 496 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 ARL8BQ9NVJ2 186 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 MAGEL2Q9UJ55 1249 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 ING1Q9UK53 422 aaPredicted RBP11.53□□□□□ -0.56
CLK3-224ENST00000568605 SLC7A7Q9UM01 511 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 SAMD4AQ9UPU9 718 aaKnown RBP11.53□□□□□ -0.56
CLK3-224ENST00000568605 B3GALT5Q9Y2C3 310 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 GPR52Q9Y2T5 361 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 FLVCR1Q9Y5Y0 555 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 DCHS2Q6V1P9 2916 aa11.53□□□□□ -0.56
CLK3-224ENST00000568605 RAI1Q7Z5J4 1906 aaPredicted RBP11.52□□□□□ -0.56
CLK3-224ENST00000568605 ABCA4P78363 2273 aa11.52□□□□□ -0.56
CLK3-224ENST00000568605 A6NNC1 897 aa11.52□□□□□ -0.57
CLK3-224ENST00000568605 TPST2O60704 377 aa11.52□□□□□ -0.57
CLK3-224ENST00000568605 FZD7O75084 574 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms