RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	ZNF771	Q7L3S4	317 aa	Predicted RBP	10.06	□□□□□ -0.8
CLK3-222	ENST00000568232	ADAMTS15	Q8TE58	950 aa		10.06	□□□□□ -0.8
CLK3-222	ENST00000568232	TMIGD2	Q96BF3	282 aa		10.06	□□□□□ -0.8
CLK3-222	ENST00000568232	PPCDC	Q96CD2	204 aa		10.06	□□□□□ -0.8
CLK3-222	ENST00000568232	ALKBH3	Q96Q83	286 aa	Predicted RBP	10.06	□□□□□ -0.8
CLK3-222	ENST00000568232	ERP44	Q9BS26	406 aa		10.06	□□□□□ -0.8
CLK3-222	ENST00000568232	IQCG	Q9H095	443 aa	Known RBP	10.06	□□□□□ -0.8
CLK3-222	ENST00000568232	MS4A5	Q9H3V2	200 aa		10.06	□□□□□ -0.8
CLK3-222	ENST00000568232	CRLF2	Q9HC73	371 aa		10.06	□□□□□ -0.8
CLK3-222	ENST00000568232	OXSM	Q9NWU1	459 aa		10.06	□□□□□ -0.8
CLK3-222	ENST00000568232	MYEF2	Q9P2K5	600 aa	Known RBP	10.06	□□□□□ -0.8
CLK3-222	ENST00000568232	FZR1	Q9UM11	496 aa		10.06	□□□□□ -0.8
CLK3-222	ENST00000568232	TRAPPC4	Q9Y296	219 aa		10.06	□□□□□ -0.8
CLK3-222	ENST00000568232	SPIN1	Q9Y657	262 aa	Predicted RBP	10.06	□□□□□ -0.8
CLK3-222	ENST00000568232	ZNF587B	E7ETH6	402 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	FCMR	O60667	390 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	UPK3A	O75631	287 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	CSTA	P01040	98 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	GSN	P06396	782 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	ENO1	P06733	434 aa	Known RBP	10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	NAT2	P11245	290 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	CBR1	P16152	277 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	NR4A1	P22736	598 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	SELENOP	P49908	381 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	PLTP	P55058	493 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	SLC35A1	P78382	337 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	TP53BP2	Q13625	1128 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	KIAA0040	Q15053	153 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	SLC9A3R2	Q15599	337 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	ABHD12B	Q7Z5M8	362 aa	Predicted RBP	10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	KIR3DL3	Q8N743	410 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	TMEM99	Q8N816	258 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	FAM169B	Q8N8A8	192 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	SYT14	Q8NB59	555 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	OR9K2	Q8NGE7	335 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	OR5D16	Q8NGK9	328 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	CLHC1	Q8NHS4	586 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	ZNF563	Q8TA94	476 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	FAM76A	Q8TAV0	307 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	WFDC12	Q8WWY7	111 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	SLC25A28	Q96A46	364 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	TSSK3	Q96PN8	268 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	SDF2	Q99470	211 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	NAA11	Q9BSU3	229 aa	Predicted RBP	10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	ZNF416	Q9BWM5	594 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	ACTRT3	Q9BYD9	372 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	SERHL2	Q9H4I8	314 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	REEP4	Q9H6H4	257 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	ZMAT3	Q9HA38	289 aa	Known RBP	10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	BAIAP2L1	Q9UHR4	511 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	MID2	Q9UJV3	735 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	WNK1	Q9H4A3	2382 aa		10.05	□□□□□ -0.8
CLK3-222	ENST00000568232	TMEM229A	B2RXF0	380 aa		10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	EIF1B	O60739	113 aa	Known RBP	10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	SEC22B	O75396	215 aa		10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	UGT2B17	O75795	530 aa		10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	URI1	O94763	535 aa	Predicted RBP	10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	AKR7A3	O95154	331 aa		10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	KNG1	P01042	644 aa		10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	IGHV2-5	P01817	119 aa		10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	TCP1	P17987	556 aa	Known RBP	10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	IMPDH1	P20839	514 aa		10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	PAX7	P23759	505 aa		10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	RBMX	P38159	391 aa	Known RBP	10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	MAGEB1	P43366	347 aa		10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	LCN2	P80188	198 aa		10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	LCP2	Q13094	533 aa		10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	MAPK14	Q16539	360 aa		10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	ALKBH6	Q3KRA9	238 aa		10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	OTUD3	Q5T2D3	398 aa	Predicted RBP	10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	GPAT4	Q86UL3	456 aa		10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	C17orf53	Q8N3J3	647 aa	Predicted RBP	10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	FBXO25	Q8TCJ0	367 aa		10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	MAGEE2	Q8TD90	523 aa	Predicted RBP	10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	MID1IP1	Q9NPA3	183 aa		10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	GPATCH2	Q9NW75	528 aa		10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	MKLN1	Q9UL63	735 aa		10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	SOX21	Q9Y651	276 aa	Predicted RBP	10.04	□□□□□ -0.8
CLK3-222	ENST00000568232	TMED7-TICAM2	A0A0A6YYA0	188 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	TMEM72	A0PK05	275 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	ZC3H12D	A2A288	527 aa	Known RBP	10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	CCDC151	A5D8V7	595 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	CCDC188	H7C350	402 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232		M0QZ24	198 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	ANKRD28	O15084	1053 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	TBX19	O60806	448 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	RSL1D1	O76021	490 aa	Known RBP	10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	PRB2	P02812	416 aa	Predicted RBP	10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	BCKDHA	P12694	445 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	PGM1	P36871	562 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	CCT3	P49368	545 aa	Known RBP	10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	EVX1	P49640	407 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	CLK1	P49759	484 aa	Known RBP	10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	PKNOX1	P55347	436 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	KRTAP10-3	P60369	221 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	MRPS11	P82912	194 aa	Known RBP	10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	ARF1	P84077	181 aa	Known RBP	10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	PDE7A	Q13946	482 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	ZNF141	Q15928	474 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	KLF17	Q5JT82	389 aa	Predicted RBP	10.03	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 509 ms