RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 A0A0B4J2E0 115 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 A0A1B0GX12 115 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 POM121CA8CG34 1229 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 GPR89AB7ZAQ6 455 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 GSTZ1O43708 216 aaPredicted RBP12.13□□□□□ -0.47
CLN3-210ENST00000563874 FCER2P06734 321 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 GPR89BP0CG08 455 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 POU3F2P20265 443 aaPredicted RBP12.13□□□□□ -0.47
CLN3-210ENST00000563874 RPL4P36578 427 aaKnown RBP12.13□□□□□ -0.47
CLN3-210ENST00000563874 RAG2P55895 527 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 OC90Q02509 493 aaPredicted RBP12.13□□□□□ -0.47
CLN3-210ENST00000563874 NDUFAF6Q330K2 333 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 ARHGAP11AQ6P4F7 1023 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 CMIPQ8IY22 773 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 OR2A5Q96R48 311 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 C7orf50Q9BRJ6 194 aaKnown RBP12.13□□□□□ -0.47
CLN3-210ENST00000563874 F5P12259 2224 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 OR5K3A6NET4 321 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 RPP14O95059 124 aaKnown RBP12.13□□□□□ -0.47
CLN3-210ENST00000563874 PVRP15151 417 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 DCTDP32321 178 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 SEC13P55735 322 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 OPCMLQ14982 345 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 IGSF11Q5DX21 431 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 CDRT4Q8N9R6 151 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 HSPA12BQ96MM6 686 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 SFXN2Q96NB2 322 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 ASB16Q96NS5 453 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 SERINC2Q96SA4 455 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 SEMA4CQ9C0C4 833 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 NOX3Q9HBY0 568 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 NCDNQ9UBB6 729 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 SLC22A7Q9Y694 548 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 COLEC10Q9Y6Z7 277 aa12.13□□□□□ -0.47
CLN3-210ENST00000563874 IFITM5A6NNB3 132 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 TSPAN4O14817 238 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 BRINP1O60477 761 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 OR2T7P0C7T2 308 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 CXCL2P19875 107 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 NANOS3P60323 173 aaKnown RBP12.12□□□□□ -0.47
CLN3-210ENST00000563874 HTRA4P83105 476 aaPredicted RBP12.12□□□□□ -0.47
CLN3-210ENST00000563874 LINC00303Q3SY05 128 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 NHLRC1Q6VVB1 395 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 LSMEM1Q8N8F7 131 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 OR2T27Q8NH04 317 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 SLC17A9Q9BYT1 436 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 ZCCHC4Q9H5U6 513 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 TRPV4Q9HBA0 871 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 DUSP22Q9NRW4 184 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 STARD5Q9NSY2 213 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 NPTNQ9Y639 398 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 RNF215Q9Y6U7 377 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 MUC22E2RYF6 1773 aaPredicted RBP12.12□□□□□ -0.47
CLN3-210ENST00000563874 PRR32B1ATL7 298 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 ACTA2P62736 377 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 ACTG2P63267 376 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 POU4F2Q12837 409 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 FAM53BQ14153 422 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 PON3Q15166 354 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 NNATQ16517 81 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 SFRP5Q5T4F7 317 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 RPL22L1Q6P5R6 122 aaKnown RBP12.12□□□□□ -0.47
CLN3-210ENST00000563874 ZNF613Q6PF04 617 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 DGAT2L6Q6ZPD8 337 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 OVCH1Q7RTY7 1134 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 MEIOBQ8N635 442 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 DNAAF1Q8NEP3 725 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 OR52B4Q8NGK2 314 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 C1orf216Q8TAB5 229 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 SLC2A12Q8TD20 617 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 FGF13Q92913 245 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 RBPMSQ93062 196 aaKnown RBP12.12□□□□□ -0.47
CLN3-210ENST00000563874 APOOQ9BUR5 198 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 CHRNA9Q9UGM1 479 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 POMT2Q9UKY4 750 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 PCDHGA5Q9Y5G8 931 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 POM121BA6NF01 834 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 PRR19A6NJB7 356 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 GRXCR1A8MXD5 290 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 H0Y8X5 98 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 KRT33AO76009 404 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 PROS1P07225 676 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 ATF4P18848 351 aaPredicted RBP12.12□□□□□ -0.47
CLN3-210ENST00000563874 GJA4P35212 333 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 SOX2P48431 317 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 STX4Q12846 297 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 OR5M10Q6IEU7 315 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 MOSPD2Q8NHP6 518 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 SYNPRQ8TBG9 265 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 RASD2Q96D21 266 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 PIPOXQ9P0Z9 390 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 KLHL9Q9P2J3 617 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 ATPIF1Q9UII2 106 aa12.12□□□□□ -0.47
CLN3-210ENST00000563874 PTPRSQ13332 1948 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 TBC1D3DA0A087WVF3 549 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 TBC1D3IA0A087WXS9 549 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 ZNF879B4DU55 563 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 TBC1D3LB9A6J9 549 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 ZFPL1O95159 310 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 ACSM4P0C7M7 580 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms