RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 H7C2Y5 167 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 ECDO95905 644 aaPredicted RBP10.44□□□□□ -0.74
LDLR-208ENST00000558518 ALG10BQ5I7T1 473 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 KCTD9Q7L273 389 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 FGF11Q92914 225 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 PGLYRP3Q96LB9 341 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 ADAD1Q96M93 576 aaKnown RBP10.44□□□□□ -0.74
LDLR-208ENST00000558518 ZNF75AQ96N20 296 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 SLC38A3Q99624 504 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 SLITRK2Q9H156 845 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 CALML5Q9NZT1 146 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 ELOA3DA6NLF2 546 aaPredicted RBP10.44□□□□□ -0.74
LDLR-208ENST00000558518 PLPP2O43688 288 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 SERPINA3P01011 423 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 PRNPP04156 253 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 INHAP05111 366 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 H2BFSP57053 126 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 PRDX1Q06830 199 aaKnown RBP10.44□□□□□ -0.74
LDLR-208ENST00000558518 ELOA3BQ3SY89 546 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 OR7E24Q6IFN5 339 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 RAB12Q6IQ22 244 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 ABHD17CQ6PCB6 329 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 HAGHLQ6PII5 290 aaPredicted RBP10.44□□□□□ -0.74
LDLR-208ENST00000558518 ZAR1Q86SH2 424 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 ELOA3Q8NG57 546 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 ZPLD1Q8TCW7 415 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 ZNRF4Q8WWF5 429 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 SUSD6Q92537 303 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 CNN2Q99439 309 aaKnown RBP10.44□□□□□ -0.74
LDLR-208ENST00000558518 TIMP4Q99727 224 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 MTHFD2LQ9H903 347 aaPredicted RBP10.44□□□□□ -0.74
LDLR-208ENST00000558518 MBNL1Q9NR56 388 aaKnown RBP10.44□□□□□ -0.74
LDLR-208ENST00000558518 PLCL2Q9UPR0 1127 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 SLC35A3Q9Y2D2 325 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 NOP16Q9Y3C1 178 aaKnown RBP10.44□□□□□ -0.74
LDLR-208ENST00000558518 V9GY05 133 aa10.44□□□□□ -0.74
LDLR-208ENST00000558518 MED12Q93074 2177 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 MPDZO75970 2070 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 A0A0A6YYD5 115 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 IGKV1-8A0A0C4DH67 115 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 C13orf42A0A1B0GVH6 325 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 GPR31O00270 319 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 GLAP06280 429 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 P2RX1P51575 399 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 ART1P52961 327 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 REEP5Q00765 189 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 TDGQ13569 410 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 GAS6Q14393 721 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 AMZ1Q400G9 498 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 UBE2NLQ5JXB2 153 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 ZNF546Q86UE3 836 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 MUC20Q8N307 709 aaPredicted RBP10.43□□□□□ -0.74
LDLR-208ENST00000558518 OR5T3Q8NGG3 340 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 BCL2L10Q9HD36 194 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 LHX6Q9UPM6 363 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 COL4A4P53420 1690 aaPredicted RBP10.43□□□□□ -0.74
LDLR-208ENST00000558518 G3V3Q6 166 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 AGPAT2O15120 278 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 LILRB5O75023 590 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 F13BP05160 661 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 VAMP1P23763 118 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 TAS2R43P59537 309 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 RAP2BP61225 183 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 SLC7A9P82251 487 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 NHLRC3Q5JS37 347 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 SLC48A1Q6P1K1 146 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 CD163Q86VB7 1156 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 CBLN2Q8IUK8 224 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 FOXRED2Q8IWF2 684 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 BEST3Q8N1M1 668 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 LRRC25Q8N386 305 aaPredicted RBP10.43□□□□□ -0.74
LDLR-208ENST00000558518 OR52E1Q8NGJ3 308 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 OR2A1Q8NGT9 310 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 HAVCR2Q8TDQ0 301 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 SLC25A28Q96A46 364 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 WDR34Q96EX3 536 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 HMX1Q9NP08 348 aaPredicted RBP10.43□□□□□ -0.74
LDLR-208ENST00000558518 NRIP3Q9NQ35 241 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 AKAP7Q9P0M2 348 aaPredicted RBP10.43□□□□□ -0.74
LDLR-208ENST00000558518 ABRACLQ9P1F3 81 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 ACSL5Q9ULC5 683 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 MFSD2BA6NFX1 497 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 HIDE1A8MVS5 230 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 ZNF705EA8MWA4 302 aaPredicted RBP10.43□□□□□ -0.74
LDLR-208ENST00000558518 RHOP08100 348 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 VSIG10L2P0DP72 767 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 NAT2P11245 290 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 PVRP15151 417 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 MFSD12Q6NUT3 480 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 C12orf76Q8N812 135 aaPredicted RBP10.43□□□□□ -0.74
LDLR-208ENST00000558518 OR10AC1Q8NH08 325 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 LCN9Q8WX39 176 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 HGDQ93099 445 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 MRGPRX3Q96LB0 322 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 Q96M85 177 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 UBL7Q96S82 380 aaPredicted RBP10.43□□□□□ -0.74
LDLR-208ENST00000558518 DPEP2Q9H4A9 486 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 WASH6PQ9NQA3 447 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 CMC2Q9NRP2 79 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 TMEM74BQ9NUR3 256 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms