RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 ELOA3BQ3SY89 546 aa15.47■□□□□ 0.07
USP28-208ENST00000540438 ELOA3Q8NG57 546 aa15.47■□□□□ 0.07
USP28-208ENST00000540438 PCNPQ8WW12 178 aaKnown RBP15.47■□□□□ 0.07
USP28-208ENST00000540438 ITPKCQ96DU7 683 aa15.47■□□□□ 0.07
USP28-208ENST00000540438 AHCYL2Q96HN2 611 aaKnown RBP15.47■□□□□ 0.07
USP28-208ENST00000540438 CDCP1Q9H5V8 836 aa15.47■□□□□ 0.07
USP28-208ENST00000540438 KLHDC2Q9Y2U9 406 aa15.47■□□□□ 0.07
USP28-208ENST00000540438 SERINC4A6NH21 518 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 HCRTR2O43614 444 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 FREM3P0C091 2139 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 EVI2BP34910 448 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 GDI2P50395 445 aaKnown RBP15.46■□□□□ 0.07
USP28-208ENST00000540438 NR0B1P51843 470 aaKnown RBP15.46■□□□□ 0.07
USP28-208ENST00000540438 DGCR2P98153 550 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 RNLSQ5VYX0 342 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 LANCL3Q6ZV70 420 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 TIGD4Q8IY51 512 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 YIPF7Q8N8F6 280 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 ZNF671Q8TAW3 534 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 C3orf49Q96BT1 292 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 NPAS1Q99742 590 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 ABCG5Q9H222 651 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 AUNIPQ9H7T9 357 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 MKKSQ9NPJ1 570 aaPredicted RBP15.46■□□□□ 0.07
USP28-208ENST00000540438 SATB2Q9UPW6 733 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 PI4KAP42356 2102 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 AHCTF1Q8WYP5 2266 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 CTNSO60931 367 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 OR2B3O76000 313 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 HOXC4P09017 264 aaPredicted RBP15.46■□□□□ 0.07
USP28-208ENST00000540438 SLC6A6P31641 620 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 DDOSTP39656 456 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 ARL4DP49703 201 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 TSSK4Q6SA08 328 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 SLC35D2Q76EJ3 337 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 PHF21AQ96BD5 680 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 PGLYRP3Q96LB9 341 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 THAP7Q9BT49 309 aaPredicted RBP15.46■□□□□ 0.07
USP28-208ENST00000540438 KCNN2Q9H2S1 579 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 KCNK15Q9H427 330 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 MYEF2Q9P2K5 600 aaKnown RBP15.46■□□□□ 0.07
USP28-208ENST00000540438 MTCH2Q9Y6C9 303 aa15.46■□□□□ 0.07
USP28-208ENST00000540438 IGHV1OR15-9A0A0B4J2B8 117 aa15.46■□□□□ 0.06
USP28-208ENST00000540438 IRGMA1A4Y4 181 aa15.46■□□□□ 0.06
USP28-208ENST00000540438 MST1P26927 711 aa15.46■□□□□ 0.06
USP28-208ENST00000540438 ATP12AP54707 1039 aa15.46■□□□□ 0.06
USP28-208ENST00000540438 NANOS3P60323 173 aaKnown RBP15.46■□□□□ 0.06
USP28-208ENST00000540438 CTXN1P60606 82 aa15.46■□□□□ 0.06
USP28-208ENST00000540438 ULK3Q6PHR2 472 aa15.46■□□□□ 0.06
USP28-208ENST00000540438 GDPD1Q8N9F7 314 aa15.46■□□□□ 0.06
USP28-208ENST00000540438 OR10AC1Q8NH08 325 aa15.46■□□□□ 0.06
USP28-208ENST00000540438 SLC7A6Q92536 515 aa15.46■□□□□ 0.06
USP28-208ENST00000540438 ATOH1Q92858 354 aaPredicted RBP15.46■□□□□ 0.06
USP28-208ENST00000540438 IKZF2Q9UKS7 526 aa15.46■□□□□ 0.06
USP28-208ENST00000540438 ATXN7L1Q9ULK2 861 aaPredicted RBP15.46■□□□□ 0.06
USP28-208ENST00000540438 ICOSLGO75144 302 aa15.45■□□□□ 0.06
USP28-208ENST00000540438 COQ9O75208 318 aa15.45■□□□□ 0.06
USP28-208ENST00000540438 NDUFB2O95178 105 aa15.45■□□□□ 0.06
USP28-208ENST00000540438 CD38P28907 300 aa15.45■□□□□ 0.06
USP28-208ENST00000540438 LTBQ06643 244 aa15.45■□□□□ 0.06
USP28-208ENST00000540438 SNTA1Q13424 505 aa15.45■□□□□ 0.06
USP28-208ENST00000540438 PON3Q15166 354 aa15.45■□□□□ 0.06
USP28-208ENST00000540438 PRTGQ2VWP7 1150 aa15.45■□□□□ 0.06
USP28-208ENST00000540438 SLC35F2Q8IXU6 374 aa15.45■□□□□ 0.06
USP28-208ENST00000540438 RHPN2P1A8MT19 583 aa15.45■□□□□ 0.06
USP28-208ENST00000540438 SHISA8B8ZZ34 492 aa15.45■□□□□ 0.06
USP28-208ENST00000540438 GDF9O60383 454 aa15.45■□□□□ 0.06
USP28-208ENST00000540438 MT-ND4P03905 459 aa15.45■□□□□ 0.06
USP28-208ENST00000540438 CAPZBP47756 277 aa15.45■□□□□ 0.06
USP28-208ENST00000540438 ASAH1Q13510 395 aa15.45■□□□□ 0.06
USP28-208ENST00000540438 KRR1Q13601 381 aaKnown RBP15.45■□□□□ 0.06
USP28-208ENST00000540438 GPR176Q14439 515 aa15.45■□□□□ 0.06
USP28-208ENST00000540438 ZNF613Q6PF04 617 aa15.45■□□□□ 0.06
USP28-208ENST00000540438 GPR119Q8TDV5 335 aa15.45■□□□□ 0.06
USP28-208ENST00000540438 WDR76Q9H967 626 aa15.45■□□□□ 0.06
USP28-208ENST00000540438 NOX4Q9NPH5 578 aa15.45■□□□□ 0.06
USP28-208ENST00000540438 ST6GALNAC1Q9NSC7 600 aaPredicted RBP15.45■□□□□ 0.06
USP28-208ENST00000540438 NUDT15Q9NV35 164 aa15.45■□□□□ 0.06
USP28-208ENST00000540438 MED17Q9NVC6 651 aa15.45■□□□□ 0.06
USP28-208ENST00000540438 MRPS33Q9Y291 106 aaKnown RBP15.45■□□□□ 0.06
USP28-208ENST00000540438 IGKV1D-42A0A075B6H8 117 aa15.44■□□□□ 0.06
USP28-208ENST00000540438 HLA-DQA2P01906 255 aa15.44■□□□□ 0.06
USP28-208ENST00000540438 GRM7Q14831 915 aa15.44■□□□□ 0.06
USP28-208ENST00000540438 NSDHLQ15738 373 aa15.44■□□□□ 0.06
USP28-208ENST00000540438 SFRP4Q6FHJ7 346 aaPredicted RBP15.44■□□□□ 0.06
USP28-208ENST00000540438 RNF113BQ8IZP6 322 aaKnown RBP15.44■□□□□ 0.06
USP28-208ENST00000540438 PTPMT1Q8WUK0 201 aaPredicted RBP15.44■□□□□ 0.06
USP28-208ENST00000540438 MS4A3Q96HJ5 214 aa15.44■□□□□ 0.06
USP28-208ENST00000540438 TMEM43Q9BTV4 400 aa15.44■□□□□ 0.06
USP28-208ENST00000540438 TRIM2Q9C040 744 aa15.44■□□□□ 0.06
USP28-208ENST00000540438 OR11A1Q9GZK7 315 aa15.44■□□□□ 0.06
USP28-208ENST00000540438 NANSQ9NR45 359 aa15.44■□□□□ 0.06
USP28-208ENST00000540438 CHRNA9Q9UGM1 479 aa15.44■□□□□ 0.06
USP28-208ENST00000540438 FZD7O75084 574 aa15.44■□□□□ 0.06
USP28-208ENST00000540438 SPI1P17947 270 aa15.44■□□□□ 0.06
USP28-208ENST00000540438 BCKDHBP21953 392 aa15.44■□□□□ 0.06
USP28-208ENST00000540438 SLC2A5P22732 501 aa15.44■□□□□ 0.06
USP28-208ENST00000540438 ARFIP1P53367 373 aa15.44■□□□□ 0.06
USP28-208ENST00000540438 PLA2G7Q13093 441 aa15.44■□□□□ 0.06
USP28-208ENST00000540438 OR51A4Q8NGJ6 313 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms