RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 OR52I2Q8NH67 350 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 ASB12Q8WXK4 309 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 PHYHIPQ92561 330 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 FOXN4Q96NZ1 517 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 HCAR1Q9BXC0 346 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 IL20Q9NYY1 176 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 GLS2Q9UI32 602 aa7.78□□□□□ -1.16
LIMCH1-216ENST00000512820 TRIP12Q14669 1992 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 TEX46H3BTG2 121 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 ZNF208O43345 1280 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 SCGB1D2O95969 90 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 IGFBP4P22692 258 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 SOX9P48436 509 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 LSSP48449 732 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 CHAF1BQ13112 559 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 DUSP8Q13202 625 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 MLC1Q15049 377 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 ZNF79Q15937 498 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 SLC25A35Q3KQZ1 300 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 OVCH1Q7RTY7 1134 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 KANSL1Q7Z3B3 1105 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 GTPBP8Q8N3Z3 284 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 LNX2Q8N448 690 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 IL17RCQ8NAC3 791 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 OR4D11Q8NGI4 311 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 ZFPM2Q8WW38 1151 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 TMEM234Q8WY98 164 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 TGM7Q96PF1 710 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 LMF2Q9BU23 707 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 PDE7BQ9NP56 450 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 ACOXLQ9NUZ1 547 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 CLDND1Q9NY35 253 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 GDE1Q9NZC3 331 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 KLRF1Q9NZS2 232 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 APOBEC3BQ9UH17 382 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 TEX13DA0A0J9YY54 714 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 H7C1C5 153 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 LALBAP00709 142 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 PROS1P07225 676 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 LIPCP11150 499 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 PPP3CBP16298 524 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 LCN6P62502 163 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 GPLD1P80108 840 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 ERV3-1Q14264 604 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 ABCA11PQ4W5N1 156 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 TMEM215Q68D42 235 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 DPY19L2P2Q6ZN68 376 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 PRR22Q8IZ63 422 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 BOLLQ8N9W6 283 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 TMEM185AQ8NFB2 350 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 ADAMTS18Q8TE60 1221 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 TMEM106AQ96A25 262 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 UPRTQ96BW1 309 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 ZG16BQ96DA0 208 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 SFXN2Q96NB2 322 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 ZNF587Q96SQ5 575 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 ELOVL3Q9HB03 270 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 DUSP22Q9NRW4 184 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 DZANK1Q9NVP4 752 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 EMC3Q9P0I2 261 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 THAP10Q9P2Z0 257 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 SLC23A1Q9UHI7 598 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 C19orf53Q9UNZ5 99 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 C14orf166Q9Y224 244 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 GPR55Q9Y2T6 319 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 SLC6A5Q9Y345 797 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 GIMAP1-GIMAP5A0A087WTJ2 511 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 DCNP07585 359 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 DLSTP36957 453 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 SQSTM1Q13501 440 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 EIF2B1Q14232 305 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 MPEG1Q2M385 716 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 YIF1BQ5BJH7 314 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 WBP2NLQ6ICG8 309 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 TSSK4Q6SA08 328 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 TTLL10Q6ZVT0 673 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 ZNF546Q86UE3 836 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 GIMAP5Q96F15 307 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 ARHGDIGQ99819 225 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 SIRT3Q9NTG7 399 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 ATXN7L1Q9ULK2 861 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 TRIM64BA6NI03 449 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 ZNF705EA8MWA4 302 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 C17orf105B2RV13 164 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 GCM2O75603 506 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 PAPLNO95428 1278 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 SIX6O95475 246 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 APBB3O95704 486 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 SFTPBP07988 381 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 ZNF35P13682 527 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 ANXA7P20073 488 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 CBX5P45973 191 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 KIAA1024LP59773 190 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 GPR18Q14330 331 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 ZBTB37Q5TC79 503 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 ZNF793Q6ZN11 406 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 GKN2Q86XP6 184 aa7.77□□□□□ -1.17
LIMCH1-216ENST00000512820 MCATQ8IVS2 390 aaKnown RBP7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms