RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 TUBGCP3Q96CW5 907 aa12.75□□□□□ -0.37
TRAF4-212ENST00000498540 ALKBH3Q96Q83 286 aaPredicted RBP12.75□□□□□ -0.37
TRAF4-212ENST00000498540 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.75□□□□□ -0.37
TRAF4-212ENST00000498540 TMEM45AQ9NWC5 275 aa12.75□□□□□ -0.37
TRAF4-212ENST00000498540 CRNNQ9UBG3 495 aaPredicted RBP12.75□□□□□ -0.37
TRAF4-212ENST00000498540 ZDHHC2Q9UIJ5 367 aa12.75□□□□□ -0.37
TRAF4-212ENST00000498540 A0A096LPE4 126 aa12.74□□□□□ -0.37
TRAF4-212ENST00000498540 A0A1W2PPZ6 126 aa12.74□□□□□ -0.37
TRAF4-212ENST00000498540 LIPT2A6NK58 231 aa12.74□□□□□ -0.37
TRAF4-212ENST00000498540 AQP7P3A6NL99 342 aa12.74□□□□□ -0.37
TRAF4-212ENST00000498540 hCG_2039718K7EN88 272 aa12.74□□□□□ -0.37
TRAF4-212ENST00000498540 SCN2BO60939 215 aa12.74□□□□□ -0.37
TRAF4-212ENST00000498540 KRT33AO76009 404 aa12.74□□□□□ -0.37
TRAF4-212ENST00000498540 SNUPNO95149 360 aaKnown RBP12.74□□□□□ -0.37
TRAF4-212ENST00000498540 IGLV1-44P01699 117 aa12.74□□□□□ -0.37
TRAF4-212ENST00000498540 IGFBP1P08833 259 aaPredicted RBP12.74□□□□□ -0.37
TRAF4-212ENST00000498540 CELA3BP08861 270 aa12.74□□□□□ -0.37
TRAF4-212ENST00000498540 SELENOPP49908 381 aa12.74□□□□□ -0.37
TRAF4-212ENST00000498540 KHKP50053 298 aa12.74□□□□□ -0.37
TRAF4-212ENST00000498540 UBE2NP61088 152 aaKnown RBP12.74□□□□□ -0.37
TRAF4-212ENST00000498540 HGFACQ04756 655 aa12.74□□□□□ -0.37
TRAF4-212ENST00000498540 CCNIQ14094 377 aa12.74□□□□□ -0.37
TRAF4-212ENST00000498540 OR7A5Q15622 319 aa12.74□□□□□ -0.37
TRAF4-212ENST00000498540 GPAT3Q53EU6 434 aa12.74□□□□□ -0.37
TRAF4-212ENST00000498540 SAXO2Q658L1 398 aa12.74□□□□□ -0.37
TRAF4-212ENST00000498540 ABHD12BQ7Z5M8 362 aaPredicted RBP12.74□□□□□ -0.37
TRAF4-212ENST00000498540 SVOPLQ8N434 492 aa12.74□□□□□ -0.37
TRAF4-212ENST00000498540 SEMA6DQ8NFY4 1073 aa12.74□□□□□ -0.37
TRAF4-212ENST00000498540 BCL2L2Q92843 193 aaPredicted RBP12.74□□□□□ -0.37
TRAF4-212ENST00000498540 APOPT1Q96IL0 206 aa12.74□□□□□ -0.37
TRAF4-212ENST00000498540 RHOXF2Q9BQY4 288 aa12.74□□□□□ -0.37
TRAF4-212ENST00000498540 SF3B5Q9BWJ5 86 aaKnown RBP12.74□□□□□ -0.37
TRAF4-212ENST00000498540 NELFAQ9H3P2 528 aa12.74□□□□□ -0.37
TRAF4-212ENST00000498540 SLC17A7Q9P2U7 560 aa12.74□□□□□ -0.37
TRAF4-212ENST00000498540 ARPC4-TTLL3A0A0A6YYG9 625 aa12.73□□□□□ -0.37
TRAF4-212ENST00000498540 ZNF587BE7ETH6 402 aa12.73□□□□□ -0.37
TRAF4-212ENST00000498540 CPSF4O95639 269 aaKnown RBP12.73□□□□□ -0.37
TRAF4-212ENST00000498540 GPIP06744 558 aa12.73□□□□□ -0.37
TRAF4-212ENST00000498540 UQCRC2P22695 453 aa12.73□□□□□ -0.37
TRAF4-212ENST00000498540 THBS4P35443 961 aa12.73□□□□□ -0.37
TRAF4-212ENST00000498540 SLC1A3P43003 542 aa12.73□□□□□ -0.37
TRAF4-212ENST00000498540 P2RY4P51582 365 aa12.73□□□□□ -0.37
TRAF4-212ENST00000498540 HPCAP84074 193 aa12.73□□□□□ -0.37
TRAF4-212ENST00000498540 RIN1Q13671 783 aa12.73□□□□□ -0.37
TRAF4-212ENST00000498540 FAM174BQ3ZCQ3 159 aa12.73□□□□□ -0.37
TRAF4-212ENST00000498540 ZNF786Q8N393 782 aa12.73□□□□□ -0.37
TRAF4-212ENST00000498540 NUP37Q8NFH4 326 aa12.73□□□□□ -0.37
TRAF4-212ENST00000498540 OR4F15Q8NGB8 312 aa12.73□□□□□ -0.37
TRAF4-212ENST00000498540 OR8J2Q8NGG1 315 aa12.73□□□□□ -0.37
TRAF4-212ENST00000498540 UBLCP1Q8WVY7 318 aaPredicted RBP12.73□□□□□ -0.37
TRAF4-212ENST00000498540 NEU4Q8WWR8 484 aaPredicted RBP12.73□□□□□ -0.37
TRAF4-212ENST00000498540 DOK1Q99704 481 aa12.73□□□□□ -0.37
TRAF4-212ENST00000498540 OCEL1Q9H607 264 aa12.73□□□□□ -0.37
TRAF4-212ENST00000498540 MKS1Q9NXB0 559 aa12.73□□□□□ -0.37
TRAF4-212ENST00000498540 ASIC5Q9NY37 505 aa12.73□□□□□ -0.37
TRAF4-212ENST00000498540 NOP53Q9NZM5 478 aaKnown RBP12.73□□□□□ -0.37
TRAF4-212ENST00000498540 METRNQ9UJH8 293 aa12.73□□□□□ -0.37
TRAF4-212ENST00000498540 TMEM129A0AVI4 362 aa12.72□□□□□ -0.37
TRAF4-212ENST00000498540 AGAP5A6NIR3 686 aa12.72□□□□□ -0.37
TRAF4-212ENST00000498540 LYNX1G3V0Z9 82 aa12.72□□□□□ -0.37
TRAF4-212ENST00000498540 HMGN4O00479 90 aa12.72□□□□□ -0.37
TRAF4-212ENST00000498540 FAAHO00519 579 aa12.72□□□□□ -0.37
TRAF4-212ENST00000498540 UPK3AO75631 287 aa12.72□□□□□ -0.37
TRAF4-212ENST00000498540 CHRM4P08173 479 aa12.72□□□□□ -0.37
TRAF4-212ENST00000498540 LYNX1P0DP58 116 aa12.72□□□□□ -0.37
TRAF4-212ENST00000498540 DVL1P1P54792 670 aaPredicted RBP12.72□□□□□ -0.37
TRAF4-212ENST00000498540 EMX2Q04743 252 aa12.72□□□□□ -0.37
TRAF4-212ENST00000498540 EPS8Q12929 822 aa12.72□□□□□ -0.37
TRAF4-212ENST00000498540 SYPL1Q16563 259 aa12.72□□□□□ -0.37
TRAF4-212ENST00000498540 C3orf36Q3SXR2 165 aa12.72□□□□□ -0.37
TRAF4-212ENST00000498540 SPATA21Q7Z572 469 aa12.72□□□□□ -0.37
TRAF4-212ENST00000498540 CMIPQ8IY22 773 aa12.72□□□□□ -0.37
TRAF4-212ENST00000498540 CDK20Q8IZL9 346 aa12.72□□□□□ -0.37
TRAF4-212ENST00000498540 ANKFN1Q8N957 763 aa12.72□□□□□ -0.37
TRAF4-212ENST00000498540 WDR60Q8WVS4 1066 aa12.72□□□□□ -0.37
TRAF4-212ENST00000498540 NEURL3Q96EH8 262 aa12.72□□□□□ -0.37
TRAF4-212ENST00000498540 SLC38A1Q9H2H9 487 aa12.72□□□□□ -0.37
TRAF4-212ENST00000498540 PIF1Q9H611 641 aa12.72□□□□□ -0.37
TRAF4-212ENST00000498540 METTL17Q9H7H0 456 aaPredicted RBP12.72□□□□□ -0.37
TRAF4-212ENST00000498540 ZNF442Q9H7R0 627 aa12.72□□□□□ -0.37
TRAF4-212ENST00000498540 PPCSQ9HAB8 311 aa12.72□□□□□ -0.37
TRAF4-212ENST00000498540 ADPRHL2Q9NX46 363 aa12.72□□□□□ -0.37
TRAF4-212ENST00000498540 MARCOQ9UEW3 520 aaPredicted RBP12.72□□□□□ -0.37
TRAF4-212ENST00000498540 SH3PXD2BA1X283 911 aa12.71□□□□□ -0.37
TRAF4-212ENST00000498540 CFAP73A6NFT4 308 aa12.71□□□□□ -0.37
TRAF4-212ENST00000498540 IGKV3-15P01624 115 aa12.71□□□□□ -0.37
TRAF4-212ENST00000498540 ERCC1P07992 297 aaPredicted RBP12.71□□□□□ -0.37
TRAF4-212ENST00000498540 IFNGR1P15260 489 aa12.71□□□□□ -0.37
TRAF4-212ENST00000498540 NPR2P20594 1047 aa12.71□□□□□ -0.37
TRAF4-212ENST00000498540 RPS4Y1P22090 263 aaKnown RBP12.71□□□□□ -0.37
TRAF4-212ENST00000498540 MAP2K6P52564 334 aa12.71□□□□□ -0.37
TRAF4-212ENST00000498540 BNIP2Q12982 314 aa12.71□□□□□ -0.37
TRAF4-212ENST00000498540 MAD2L1Q13257 205 aaPredicted RBP12.71□□□□□ -0.37
TRAF4-212ENST00000498540 ADRM1Q16186 407 aa12.71□□□□□ -0.37
TRAF4-212ENST00000498540 MRPL2Q5T653 305 aaKnown RBP12.71□□□□□ -0.37
TRAF4-212ENST00000498540 TMEM225Q6GV28 225 aa12.71□□□□□ -0.37
TRAF4-212ENST00000498540 NIPAL3Q6P499 406 aa12.71□□□□□ -0.37
TRAF4-212ENST00000498540 CREB3L2Q70SY1 520 aa12.71□□□□□ -0.37
TRAF4-212ENST00000498540 MAGEE2Q8TD90 523 aaPredicted RBP12.71□□□□□ -0.37
TRAF4-212ENST00000498540 UBASH3BQ8TF42 649 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms