RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 SLC7A10Q9NS82 523 aa20.24■□□□□ 0.83
COL9A3-213ENST00000489045 ADPRHL2Q9NX46 363 aa20.24■□□□□ 0.83
COL9A3-213ENST00000489045 UPB1Q9UBR1 384 aa20.24■□□□□ 0.83
COL9A3-213ENST00000489045 MAGED1Q9Y5V3 778 aaPredicted RBP20.24■□□□□ 0.83
COL9A3-213ENST00000489045 SLC25A15Q9Y619 301 aa20.24■□□□□ 0.83
COL9A3-213ENST00000489045 TMEM229AB2RXF0 380 aa20.23■□□□□ 0.83
COL9A3-213ENST00000489045 OVOL3O00110 214 aa20.23■□□□□ 0.83
COL9A3-213ENST00000489045 PDLIM1O00151 329 aa20.23■□□□□ 0.83
COL9A3-213ENST00000489045 LY6G6DO95868 133 aa20.23■□□□□ 0.83
COL9A3-213ENST00000489045 ARAFP10398 606 aa20.23■□□□□ 0.83
COL9A3-213ENST00000489045 CDH11P55287 796 aa20.23■□□□□ 0.83
COL9A3-213ENST00000489045 HOXC5Q00444 222 aa20.23■□□□□ 0.83
COL9A3-213ENST00000489045 PGGHGQ32M88 737 aa20.23■□□□□ 0.83
COL9A3-213ENST00000489045 GCNT6Q5T4J0 391 aa20.23■□□□□ 0.83
COL9A3-213ENST00000489045 TSPO2Q5TGU0 170 aa20.23■□□□□ 0.83
COL9A3-213ENST00000489045 C1orf140Q5VVS0 124 aa20.23■□□□□ 0.83
COL9A3-213ENST00000489045 C10orf111Q8N326 155 aa20.23■□□□□ 0.83
COL9A3-213ENST00000489045 ZIC4Q8N9L1 334 aa20.23■□□□□ 0.83
COL9A3-213ENST00000489045 NFKBIDQ8NI38 313 aa20.23■□□□□ 0.83
COL9A3-213ENST00000489045 TMEM45BQ96B21 275 aa20.23■□□□□ 0.83
COL9A3-213ENST00000489045 SF3B5Q9BWJ5 86 aaKnown RBP20.23■□□□□ 0.83
COL9A3-213ENST00000489045 INTS9Q9NV88 658 aaKnown RBP20.23■□□□□ 0.83
COL9A3-213ENST00000489045 VAPAQ9P0L0 249 aa20.23■□□□□ 0.83
COL9A3-213ENST00000489045 CDKN1AP38936 164 aa20.22■□□□□ 0.83
COL9A3-213ENST00000489045 ATP4BP51164 291 aa20.22■□□□□ 0.83
COL9A3-213ENST00000489045 ZNF83P51522 516 aa20.22■□□□□ 0.83
COL9A3-213ENST00000489045 SQLEQ14534 574 aa20.22■□□□□ 0.83
COL9A3-213ENST00000489045 AGKQ53H12 422 aa20.22■□□□□ 0.83
COL9A3-213ENST00000489045 OR7E24Q6IFN5 339 aa20.22■□□□□ 0.83
COL9A3-213ENST00000489045 TMEM108Q6UXF1 575 aa20.22■□□□□ 0.83
COL9A3-213ENST00000489045 GPAT4Q86UL3 456 aa20.22■□□□□ 0.83
COL9A3-213ENST00000489045 SLC35B4Q969S0 331 aa20.22■□□□□ 0.83
COL9A3-213ENST00000489045 GTPBP3Q969Y2 492 aaKnown RBP20.22■□□□□ 0.83
COL9A3-213ENST00000489045 MUS81Q96NY9 551 aa20.22■□□□□ 0.83
COL9A3-213ENST00000489045 ZNF385AQ96PM9 386 aaKnown RBP20.22■□□□□ 0.83
COL9A3-213ENST00000489045 AMBRA1Q9C0C7 1298 aa20.22■□□□□ 0.83
COL9A3-213ENST00000489045 HEATR1Q9H583 2144 aaKnown RBP20.22■□□□□ 0.83
COL9A3-213ENST00000489045 CISD1Q9NZ45 108 aaKnown RBP20.22■□□□□ 0.83
COL9A3-213ENST00000489045 DCTN4Q9UJW0 460 aa20.22■□□□□ 0.83
COL9A3-213ENST00000489045 TRBV5-3A0A0A0MS03 114 aa20.21■□□□□ 0.83
COL9A3-213ENST00000489045 HMGB1P1B2RPK0 211 aaPredicted RBP20.21■□□□□ 0.83
COL9A3-213ENST00000489045 NPIPB7O75200 414 aa20.21■□□□□ 0.83
COL9A3-213ENST00000489045 ETS2P15036 469 aa20.21■□□□□ 0.83
COL9A3-213ENST00000489045 PPIBP23284 216 aaKnown RBP20.21■□□□□ 0.83
COL9A3-213ENST00000489045 P2RY4P51582 365 aa20.21■□□□□ 0.83
COL9A3-213ENST00000489045 AAED1Q7RTV5 226 aa20.21■□□□□ 0.83
COL9A3-213ENST00000489045 PIAS4Q8N2W9 510 aaPredicted RBP20.21■□□□□ 0.83
COL9A3-213ENST00000489045 STK35Q8TDR2 534 aa20.21■□□□□ 0.83
COL9A3-213ENST00000489045 TRMT61AQ96FX7 289 aaKnown RBP20.21■□□□□ 0.83
COL9A3-213ENST00000489045 RSPO3Q9BXY4 272 aaPredicted RBP20.21■□□□□ 0.83
COL9A3-213ENST00000489045 IKZF5Q9H5V7 419 aa20.21■□□□□ 0.83
COL9A3-213ENST00000489045 TMEM45AQ9NWC5 275 aa20.21■□□□□ 0.83
COL9A3-213ENST00000489045 FN1P02751 2386 aaKnown RBP20.21■□□□□ 0.83
COL9A3-213ENST00000489045 PRKAR1BP31321 381 aa20.2■□□□□ 0.82
COL9A3-213ENST00000489045 IRX1P78414 480 aaPredicted RBP20.2■□□□□ 0.82
COL9A3-213ENST00000489045 CDK6Q00534 326 aa20.2■□□□□ 0.82
COL9A3-213ENST00000489045 SPOCK1Q08629 439 aa20.2■□□□□ 0.82
COL9A3-213ENST00000489045 TMEM225Q6GV28 225 aa20.2■□□□□ 0.82
COL9A3-213ENST00000489045 REEP3Q6NUK4 255 aa20.2■□□□□ 0.82
COL9A3-213ENST00000489045 KLHL17Q6TDP4 642 aa20.2■□□□□ 0.82
COL9A3-213ENST00000489045 HDXQ7Z353 690 aa20.2■□□□□ 0.82
COL9A3-213ENST00000489045 C1orf162Q8NEQ5 155 aaPredicted RBP20.2■□□□□ 0.82
COL9A3-213ENST00000489045 CKAP2Q8WWK9 683 aa20.2■□□□□ 0.82
COL9A3-213ENST00000489045 THOC1Q96FV9 657 aaKnown RBP20.2■□□□□ 0.82
COL9A3-213ENST00000489045 TRAF4Q9BUZ4 470 aaPredicted RBP20.2■□□□□ 0.82
COL9A3-213ENST00000489045 SLCO5A1Q9H2Y9 848 aa20.2■□□□□ 0.82
COL9A3-213ENST00000489045 NIPSNAP3AQ9UFN0 247 aaPredicted RBP20.2■□□□□ 0.82
COL9A3-213ENST00000489045 GMEB1Q9Y692 573 aa20.2■□□□□ 0.82
COL9A3-213ENST00000489045 M0R1B8 84 aa20.19■□□□□ 0.82
COL9A3-213ENST00000489045 AHSA1O95433 338 aa20.19■□□□□ 0.82
COL9A3-213ENST00000489045 CD40P25942 277 aa20.19■□□□□ 0.82
COL9A3-213ENST00000489045 COMTD1Q86VU5 262 aa20.19■□□□□ 0.82
COL9A3-213ENST00000489045 KRT73Q86Y46 540 aa20.19■□□□□ 0.82
COL9A3-213ENST00000489045 C17orf78Q8N4C9 275 aa20.19■□□□□ 0.82
COL9A3-213ENST00000489045 WDR31Q8NA23 367 aa20.19■□□□□ 0.82
COL9A3-213ENST00000489045 RADILQ96JH8 1075 aa20.19■□□□□ 0.82
COL9A3-213ENST00000489045 MAGEB18Q96M61 343 aa20.19■□□□□ 0.82
COL9A3-213ENST00000489045 C1QTNF6Q9BXI9 259 aa20.19■□□□□ 0.82
COL9A3-213ENST00000489045 ALG2Q9H553 416 aa20.19■□□□□ 0.82
COL9A3-213ENST00000489045 PIF1Q9H611 641 aa20.19■□□□□ 0.82
COL9A3-213ENST00000489045 SLC17A5Q9NRA2 495 aa20.19■□□□□ 0.82
COL9A3-213ENST00000489045 RPS6KB2Q9UBS0 482 aa20.19■□□□□ 0.82
COL9A3-213ENST00000489045 MGAT4BQ9UQ53 548 aa20.19■□□□□ 0.82
COL9A3-213ENST00000489045 CSPG4Q6UVK1 2322 aa20.18■□□□□ 0.82
COL9A3-213ENST00000489045 ELOA3DA6NLF2 546 aaPredicted RBP20.18■□□□□ 0.82
COL9A3-213ENST00000489045 VAMP5O95183 116 aa20.18■□□□□ 0.82
COL9A3-213ENST00000489045 CD8AP01732 235 aa20.18■□□□□ 0.82
COL9A3-213ENST00000489045 PTAFRP25105 342 aa20.18■□□□□ 0.82
COL9A3-213ENST00000489045 MPGP29372 298 aa20.18■□□□□ 0.82
COL9A3-213ENST00000489045 RPS5P46782 204 aaKnown RBP20.18■□□□□ 0.82
COL9A3-213ENST00000489045 SLC25A3Q00325 362 aa20.18■□□□□ 0.82
COL9A3-213ENST00000489045 TGFBR3Q03167 851 aa20.18■□□□□ 0.82
COL9A3-213ENST00000489045 EGR4Q05215 589 aa20.18■□□□□ 0.82
COL9A3-213ENST00000489045 TNK1Q13470 666 aa20.18■□□□□ 0.82
COL9A3-213ENST00000489045 SCARB2Q14108 478 aa20.18■□□□□ 0.82
COL9A3-213ENST00000489045 ELOA3BQ3SY89 546 aa20.18■□□□□ 0.82
COL9A3-213ENST00000489045 DHRS4L2Q6PKH6 230 aa20.18■□□□□ 0.82
COL9A3-213ENST00000489045 SLC22A25Q6T423 547 aa20.18■□□□□ 0.82
COL9A3-213ENST00000489045 DTX2Q86UW9 622 aa20.18■□□□□ 0.82
COL9A3-213ENST00000489045 POMGNT2Q8NAT1 580 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms