RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 WBP2NLQ6ICG8 309 aa18.91■□□□□ 0.62
USP40-215ENST00000484528 DNM1P46Q6ZS02 220 aa18.91■□□□□ 0.62
USP40-215ENST00000484528 ZIC4Q8N9L1 334 aa18.91■□□□□ 0.62
USP40-215ENST00000484528 RADILQ96JH8 1075 aa18.91■□□□□ 0.62
USP40-215ENST00000484528 DHRS9Q9BPW9 319 aa18.91■□□□□ 0.62
USP40-215ENST00000484528 BARX1Q9HBU1 254 aaPredicted RBP18.91■□□□□ 0.62
USP40-215ENST00000484528 DCTN4Q9UJW0 460 aa18.91■□□□□ 0.62
USP40-215ENST00000484528 CHST2Q9Y4C5 530 aa18.91■□□□□ 0.62
USP40-215ENST00000484528 FRS3O43559 492 aa18.9■□□□□ 0.62
USP40-215ENST00000484528 NUDT7P0C024 238 aa18.9■□□□□ 0.62
USP40-215ENST00000484528 ZCCHC18P0CG32 403 aa18.9■□□□□ 0.62
USP40-215ENST00000484528 MAP2K6P52564 334 aa18.9■□□□□ 0.62
USP40-215ENST00000484528 RNF220Q5VTB9 566 aa18.9■□□□□ 0.62
USP40-215ENST00000484528 C11orf71Q6IPW1 123 aa18.9■□□□□ 0.62
USP40-215ENST00000484528 AAED1Q7RTV5 226 aa18.9■□□□□ 0.62
USP40-215ENST00000484528 SERPINA11Q86U17 422 aa18.9■□□□□ 0.62
USP40-215ENST00000484528 FBXL14Q8N1E6 418 aa18.9■□□□□ 0.62
USP40-215ENST00000484528 TMEM45BQ96B21 275 aa18.9■□□□□ 0.62
USP40-215ENST00000484528 TLCD1Q96CP7 247 aa18.9■□□□□ 0.62
USP40-215ENST00000484528 AMBRA1Q9C0C7 1298 aa18.9■□□□□ 0.62
USP40-215ENST00000484528 GRIP2Q9C0E4 1043 aa18.9■□□□□ 0.62
USP40-215ENST00000484528 TMBIM4Q9HC24 238 aa18.9■□□□□ 0.62
USP40-215ENST00000484528 SLC17A5Q9NRA2 495 aa18.9■□□□□ 0.62
USP40-215ENST00000484528 CBLN4Q9NTU7 201 aa18.9■□□□□ 0.62
USP40-215ENST00000484528 DNHD1Q96M86 4753 aa18.89■□□□□ 0.61
USP40-215ENST00000484528 AQP7P3A6NL99 342 aa18.89■□□□□ 0.61
USP40-215ENST00000484528 FABP6P51161 128 aa18.89■□□□□ 0.61
USP40-215ENST00000484528 NUDT6P53370 316 aa18.89■□□□□ 0.61
USP40-215ENST00000484528 SLC18A1P54219 525 aa18.89■□□□□ 0.61
USP40-215ENST00000484528 HOXC5Q00444 222 aa18.89■□□□□ 0.61
USP40-215ENST00000484528 LGALS3BPQ08380 585 aa18.89■□□□□ 0.61
USP40-215ENST00000484528 LARS2Q15031 903 aaKnown RBP18.89■□□□□ 0.61
USP40-215ENST00000484528 SLC2A7Q6PXP3 512 aa18.89■□□□□ 0.61
USP40-215ENST00000484528 MSANTD1Q6ZTZ1 278 aa18.89■□□□□ 0.61
USP40-215ENST00000484528 MIER2Q8N344 545 aa18.89■□□□□ 0.61
USP40-215ENST00000484528 MUC15Q8N387 334 aa18.89■□□□□ 0.61
USP40-215ENST00000484528 MAL2Q969L2 176 aa18.89■□□□□ 0.61
USP40-215ENST00000484528 MDFIQ99750 246 aa18.89■□□□□ 0.61
USP40-215ENST00000484528 TAPBPLQ9BX59 468 aa18.89■□□□□ 0.61
USP40-215ENST00000484528 CACYBPQ9HB71 228 aaKnown RBP18.89■□□□□ 0.61
USP40-215ENST00000484528 AMDHD2Q9Y303 409 aa18.89■□□□□ 0.61
USP40-215ENST00000484528 ATP23Q9Y6H3 246 aa18.89■□□□□ 0.61
USP40-215ENST00000484528 YLPM1P49750 1951 aaKnown RBP18.89■□□□□ 0.61
USP40-215ENST00000484528 IGHV4-30-2A0A087WSY4 118 aa18.88■□□□□ 0.61
USP40-215ENST00000484528 TMEM247A6NEH6 219 aa18.88■□□□□ 0.61
USP40-215ENST00000484528 CRLF1O75462 422 aa18.88■□□□□ 0.61
USP40-215ENST00000484528 TP53P04637 393 aaPredicted RBP18.88■□□□□ 0.61
USP40-215ENST00000484528 MPGP29372 298 aa18.88■□□□□ 0.61
USP40-215ENST00000484528 NRF1Q16656 503 aa18.88■□□□□ 0.61
USP40-215ENST00000484528 HIKESHIQ53FT3 197 aa18.88■□□□□ 0.61
USP40-215ENST00000484528 C1orf140Q5VVS0 124 aa18.88■□□□□ 0.61
USP40-215ENST00000484528 TMEM225Q6GV28 225 aa18.88■□□□□ 0.61
USP40-215ENST00000484528 DEPDC4Q8N2C3 294 aa18.88■□□□□ 0.61
USP40-215ENST00000484528 C17orf78Q8N4C9 275 aa18.88■□□□□ 0.61
USP40-215ENST00000484528 C1orf162Q8NEQ5 155 aaPredicted RBP18.88■□□□□ 0.61
USP40-215ENST00000484528 C3orf49Q96BT1 292 aa18.88■□□□□ 0.61
USP40-215ENST00000484528 ADAD1Q96M93 576 aaKnown RBP18.88■□□□□ 0.61
USP40-215ENST00000484528 SPATA9Q9BWV2 254 aa18.88■□□□□ 0.61
USP40-215ENST00000484528 PAIP1Q9H074 479 aaKnown RBP18.88■□□□□ 0.61
USP40-215ENST00000484528 PCDHB14Q9Y5E9 798 aa18.88■□□□□ 0.61
USP40-215ENST00000484528 USH1CQ9Y6N9 552 aa18.88■□□□□ 0.61
USP40-215ENST00000484528 ANK3Q12955 4377 aaKnown RBP18.88■□□□□ 0.61
USP40-215ENST00000484528 A0A0G2JPF8 293 aa18.87■□□□□ 0.61
USP40-215ENST00000484528 FAM234BA2RU67 622 aa18.87■□□□□ 0.61
USP40-215ENST00000484528 A8MVM7 634 aa18.87■□□□□ 0.61
USP40-215ENST00000484528 HNRNPCL2B2RXH8 293 aa18.87■□□□□ 0.61
USP40-215ENST00000484528 HNRNPCL3B7ZW38 293 aa18.87■□□□□ 0.61
USP40-215ENST00000484528 ATP6V1G2-DDX39BF2Z307 99 aa18.87■□□□□ 0.61
USP40-215ENST00000484528 KLF11O14901 512 aa18.87■□□□□ 0.61
USP40-215ENST00000484528 HNRNPCL1O60812 293 aaKnown RBP18.87■□□□□ 0.61
USP40-215ENST00000484528 HNRNPCL4P0DMR1 293 aa18.87■□□□□ 0.61
USP40-215ENST00000484528 P2RY4P51582 365 aa18.87■□□□□ 0.61
USP40-215ENST00000484528 TGFBR3Q03167 851 aa18.87■□□□□ 0.61
USP40-215ENST00000484528 RGNQ15493 299 aa18.87■□□□□ 0.61
USP40-215ENST00000484528 ZNF311Q5JNZ3 666 aa18.87■□□□□ 0.61
USP40-215ENST00000484528 PRAMEF8Q5VWM4 474 aa18.87■□□□□ 0.61
USP40-215ENST00000484528 PRAMEF7Q5VXH5 474 aa18.87■□□□□ 0.61
USP40-215ENST00000484528 KLHL24Q6TFL4 600 aa18.87■□□□□ 0.61
USP40-215ENST00000484528 GTF2H4Q92759 462 aa18.87■□□□□ 0.61
USP40-215ENST00000484528 ALKBH3Q96Q83 286 aaPredicted RBP18.87■□□□□ 0.61
USP40-215ENST00000484528 SF3B5Q9BWJ5 86 aaKnown RBP18.87■□□□□ 0.61
USP40-215ENST00000484528 ZNF232Q9UNY5 417 aa18.87■□□□□ 0.61
USP40-215ENST00000484528 TMEM229AB2RXF0 380 aa18.86■□□□□ 0.61
USP40-215ENST00000484528 KRT33AO76009 404 aa18.86■□□□□ 0.61
USP40-215ENST00000484528 SELENOPP49908 381 aa18.86■□□□□ 0.61
USP40-215ENST00000484528 EPGNQ6UW88 154 aa18.86■□□□□ 0.61
USP40-215ENST00000484528 POMGNT2Q8NAT1 580 aa18.86■□□□□ 0.61
USP40-215ENST00000484528 SLC25A36Q96CQ1 311 aa18.86■□□□□ 0.61
USP40-215ENST00000484528 RHNO1Q9BSD3 238 aa18.86■□□□□ 0.61
USP40-215ENST00000484528 YAE1D1Q9NRH1 226 aa18.86■□□□□ 0.61
USP40-215ENST00000484528 CLIC1O00299 241 aa18.85■□□□□ 0.61
USP40-215ENST00000484528 GPRIN2O60269 458 aa18.85■□□□□ 0.61
USP40-215ENST00000484528 ERLIN1O75477 346 aa18.85■□□□□ 0.61
USP40-215ENST00000484528 AHSA1O95433 338 aa18.85■□□□□ 0.61
USP40-215ENST00000484528 LGI1O95970 557 aa18.85■□□□□ 0.61
USP40-215ENST00000484528 PRPS1P60891 318 aa18.85■□□□□ 0.61
USP40-215ENST00000484528 ZNF525Q8N782 197 aa18.85■□□□□ 0.61
USP40-215ENST00000484528 ARMC7Q9H6L4 198 aa18.85■□□□□ 0.61
USP40-215ENST00000484528 FKRPQ9H9S5 495 aa18.85■□□□□ 0.61
USP40-215ENST00000484528 A4GALTQ9NPC4 353 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms