RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 VRK2Q86Y07 508 aa17.32■□□□□ 0.36
COL9A3-210ENST00000472880 TMEM99Q8N816 258 aa17.32■□□□□ 0.36
COL9A3-210ENST00000472880 OR9K2Q8NGE7 335 aa17.32■□□□□ 0.36
COL9A3-210ENST00000472880 TAPBPLQ9BX59 468 aa17.32■□□□□ 0.36
COL9A3-210ENST00000472880 SLC6A13Q9NSD5 602 aa17.32■□□□□ 0.36
COL9A3-210ENST00000472880 ZNF443Q9Y2A4 671 aaPredicted RBP17.32■□□□□ 0.36
COL9A3-210ENST00000472880 FAM234BA2RU67 622 aa17.31■□□□□ 0.36
COL9A3-210ENST00000472880 AQP7P3A6NL99 342 aa17.31■□□□□ 0.36
COL9A3-210ENST00000472880 H7C417 338 aa17.31■□□□□ 0.36
COL9A3-210ENST00000472880 SNNO75324 88 aaPredicted RBP17.31■□□□□ 0.36
COL9A3-210ENST00000472880 WNT11O96014 354 aa17.31■□□□□ 0.36
COL9A3-210ENST00000472880 BMP4P12644 408 aa17.31■□□□□ 0.36
COL9A3-210ENST00000472880 NCF2P19878 526 aaPredicted RBP17.31■□□□□ 0.36
COL9A3-210ENST00000472880 PRPS1P60891 318 aa17.31■□□□□ 0.36
COL9A3-210ENST00000472880 DSTNP60981 165 aa17.31■□□□□ 0.36
COL9A3-210ENST00000472880 SLC25A3Q00325 362 aa17.31■□□□□ 0.36
COL9A3-210ENST00000472880 LARS2Q15031 903 aaKnown RBP17.31■□□□□ 0.36
COL9A3-210ENST00000472880 MAPK11Q15759 364 aa17.31■□□□□ 0.36
COL9A3-210ENST00000472880 RNF220Q5VTB9 566 aa17.31■□□□□ 0.36
COL9A3-210ENST00000472880 ATG16L1Q676U5 607 aa17.31■□□□□ 0.36
COL9A3-210ENST00000472880 ABHD12BQ7Z5M8 362 aaPredicted RBP17.31■□□□□ 0.36
COL9A3-210ENST00000472880 POMGNT2Q8NAT1 580 aa17.31■□□□□ 0.36
COL9A3-210ENST00000472880 HTRA1Q92743 480 aa17.31■□□□□ 0.36
COL9A3-210ENST00000472880 RMND5AQ9H871 391 aa17.31■□□□□ 0.36
COL9A3-210ENST00000472880 ADPRHL2Q9NX46 363 aa17.31■□□□□ 0.36
COL9A3-210ENST00000472880 PRDM4Q9UKN5 801 aa17.31■□□□□ 0.36
COL9A3-210ENST00000472880 TMEM247A6NEH6 219 aa17.3■□□□□ 0.36
COL9A3-210ENST00000472880 A8MVM7 634 aa17.3■□□□□ 0.36
COL9A3-210ENST00000472880 KRT33AO76009 404 aa17.3■□□□□ 0.36
COL9A3-210ENST00000472880 CDH2P19022 906 aaPredicted RBP17.3■□□□□ 0.36
COL9A3-210ENST00000472880 MVDP53602 400 aa17.3■□□□□ 0.36
COL9A3-210ENST00000472880 CHRNB3Q05901 458 aa17.3■□□□□ 0.36
COL9A3-210ENST00000472880 BNIP2Q12982 314 aa17.3■□□□□ 0.36
COL9A3-210ENST00000472880 ZSWIM7Q19AV6 140 aa17.3■□□□□ 0.36
COL9A3-210ENST00000472880 TMEM225Q6GV28 225 aa17.3■□□□□ 0.36
COL9A3-210ENST00000472880 OR10H5Q8NGA6 315 aa17.3■□□□□ 0.36
COL9A3-210ENST00000472880 ZNF385AQ96PM9 386 aaKnown RBP17.3■□□□□ 0.36
COL9A3-210ENST00000472880 PIF1Q9H611 641 aa17.3■□□□□ 0.36
COL9A3-210ENST00000472880 ARMC7Q9H6L4 198 aa17.3■□□□□ 0.36
COL9A3-210ENST00000472880 TPT1P8Q9HAU6 139 aa17.3■□□□□ 0.36
COL9A3-210ENST00000472880 ZIM2Q9NZV7 527 aa17.3■□□□□ 0.36
COL9A3-210ENST00000472880 A8MV72 311 aaPredicted RBP17.29■□□□□ 0.36
COL9A3-210ENST00000472880 ATP6V1G2-DDX39BF2Z307 99 aa17.29■□□□□ 0.36
COL9A3-210ENST00000472880 FRS3O43559 492 aa17.29■□□□□ 0.36
COL9A3-210ENST00000472880 ZCCHC18P0CG32 403 aa17.29■□□□□ 0.36
COL9A3-210ENST00000472880 SLC25A16P16260 332 aa17.29■□□□□ 0.36
COL9A3-210ENST00000472880 ACAA2P42765 397 aaKnown RBP17.29■□□□□ 0.36
COL9A3-210ENST00000472880 RPS26P11Q5JNZ5 115 aaPredicted RBP17.29■□□□□ 0.36
COL9A3-210ENST00000472880 C6orf10Q5SRN2 563 aa17.29■□□□□ 0.36
COL9A3-210ENST00000472880 AGBL2Q5U5Z8 902 aa17.29■□□□□ 0.36
COL9A3-210ENST00000472880 HMBOX1Q6NT76 420 aa17.29■□□□□ 0.36
COL9A3-210ENST00000472880 MSANTD1Q6ZTZ1 278 aa17.29■□□□□ 0.36
COL9A3-210ENST00000472880 HIPK1Q86Z02 1210 aa17.29■□□□□ 0.36
COL9A3-210ENST00000472880 ZNF525Q8N782 197 aa17.29■□□□□ 0.36
COL9A3-210ENST00000472880 ZIC4Q8N9L1 334 aa17.29■□□□□ 0.36
COL9A3-210ENST00000472880 SLC38A5Q8WUX1 472 aa17.29■□□□□ 0.36
COL9A3-210ENST00000472880 TMEM19Q96HH6 336 aa17.29■□□□□ 0.36
COL9A3-210ENST00000472880 ITCHQ96J02 903 aa17.29■□□□□ 0.36
COL9A3-210ENST00000472880 MAELQ96JY0 434 aaKnown RBP17.29■□□□□ 0.36
COL9A3-210ENST00000472880 THUMPD1Q9NXG2 353 aaKnown RBP17.29■□□□□ 0.36
COL9A3-210ENST00000472880 NKIRAS1Q9NYS0 192 aa17.29■□□□□ 0.36
COL9A3-210ENST00000472880 ZNF232Q9UNY5 417 aa17.29■□□□□ 0.36
COL9A3-210ENST00000472880 SONP18583 2426 aaKnown RBP17.29■□□□□ 0.36
COL9A3-210ENST00000472880 ANK3Q12955 4377 aaKnown RBP17.28■□□□□ 0.36
COL9A3-210ENST00000472880 A0A096LPI6 279 aa17.28■□□□□ 0.36
COL9A3-210ENST00000472880 ZNF587BE7ETH6 402 aa17.28■□□□□ 0.36
COL9A3-210ENST00000472880 GPRIN2O60269 458 aa17.28■□□□□ 0.36
COL9A3-210ENST00000472880 IFNA2P01563 188 aa17.28■□□□□ 0.36
COL9A3-210ENST00000472880 CSF3P09919 207 aa17.28■□□□□ 0.36
COL9A3-210ENST00000472880 TFPTP0C1Z6 253 aa17.28■□□□□ 0.36
COL9A3-210ENST00000472880 APOBEC3AP31941 199 aaPredicted RBP17.28■□□□□ 0.36
COL9A3-210ENST00000472880 GTDC1Q4AE62 458 aa17.28■□□□□ 0.36
COL9A3-210ENST00000472880 SLC9B1Q4ZJI4 515 aa17.28■□□□□ 0.36
COL9A3-210ENST00000472880 HIKESHIQ53FT3 197 aa17.28■□□□□ 0.36
COL9A3-210ENST00000472880 C1orf140Q5VVS0 124 aa17.28■□□□□ 0.36
COL9A3-210ENST00000472880 PRAMEF8Q5VWM4 474 aa17.28■□□□□ 0.36
COL9A3-210ENST00000472880 PRAMEF7Q5VXH5 474 aa17.28■□□□□ 0.36
COL9A3-210ENST00000472880 SPATA3Q8NHX4 192 aa17.28■□□□□ 0.36
COL9A3-210ENST00000472880 FAM168AQ92567 244 aa17.28■□□□□ 0.36
COL9A3-210ENST00000472880 AURKBQ96GD4 344 aaPredicted RBP17.28■□□□□ 0.36
COL9A3-210ENST00000472880 KCNS3Q9BQ31 491 aa17.28■□□□□ 0.36
COL9A3-210ENST00000472880 SPATA9Q9BWV2 254 aa17.28■□□□□ 0.36
COL9A3-210ENST00000472880 SDR39U1Q9NRG7 319 aaPredicted RBP17.28■□□□□ 0.36
COL9A3-210ENST00000472880 PMF1-BGLAPU3KQ54 211 aa17.28■□□□□ 0.36
COL9A3-210ENST00000472880 PLCE1Q9P212 2302 aa17.28■□□□□ 0.36
COL9A3-210ENST00000472880 ABCA1O95477 2261 aa17.28■□□□□ 0.36
COL9A3-210ENST00000472880 A0A096LNT2 108 aa17.27■□□□□ 0.36
COL9A3-210ENST00000472880 A0A0G2JPF8 293 aa17.27■□□□□ 0.36
COL9A3-210ENST00000472880 ELOA3DA6NLF2 546 aaPredicted RBP17.27■□□□□ 0.36
COL9A3-210ENST00000472880 HNRNPCL2B2RXH8 293 aa17.27■□□□□ 0.36
COL9A3-210ENST00000472880 HNRNPCL3B7ZW38 293 aa17.27■□□□□ 0.36
COL9A3-210ENST00000472880 HNRNPCL1O60812 293 aaKnown RBP17.27■□□□□ 0.36
COL9A3-210ENST00000472880 VAMP5O95183 116 aa17.27■□□□□ 0.36
COL9A3-210ENST00000472880 AHSA1O95433 338 aa17.27■□□□□ 0.36
COL9A3-210ENST00000472880 HNRNPCL4P0DMR1 293 aa17.27■□□□□ 0.36
COL9A3-210ENST00000472880 PRG2P13727 222 aa17.27■□□□□ 0.36
COL9A3-210ENST00000472880 POLR2JP52435 117 aaKnown RBP17.27■□□□□ 0.36
COL9A3-210ENST00000472880 LOXL1Q08397 574 aaPredicted RBP17.27■□□□□ 0.36
COL9A3-210ENST00000472880 TMEM249Q2WGJ8 235 aa17.27■□□□□ 0.36
COL9A3-210ENST00000472880 ELOA3BQ3SY89 546 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms