RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 TMEM181Q9P2C4 612 aa8.49□□□□□ -1.05
USP39-212ENST00000465514 PCDHB10Q9UN67 800 aa8.49□□□□□ -1.05
USP39-212ENST00000465514 TMED7Q9Y3B3 224 aa8.49□□□□□ -1.05
USP39-212ENST00000465514 FKBP7Q9Y680 259 aa8.49□□□□□ -1.05
USP39-212ENST00000465514 ATP23Q9Y6H3 246 aa8.49□□□□□ -1.05
USP39-212ENST00000465514 LOC390937A0A1W2PQ73 354 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 TMEM72A0PK05 275 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 WDR91A4D1P6 747 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 PDLIM1O00151 329 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 HMGN4O00479 90 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 AP3D1O14617 1153 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 TYROBPO43914 113 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 EIF1BO60739 113 aaKnown RBP8.48□□□□□ -1.05
USP39-212ENST00000465514 IMPDH2P12268 514 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 CHI3L1P36222 383 aaPredicted RBP8.48□□□□□ -1.05
USP39-212ENST00000465514 HTR3AP46098 478 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 SLC35A1P78382 337 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 SLC25A3Q00325 362 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 CASP8Q14790 479 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 SYPL1Q16563 259 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 ZNF781Q8N8C0 355 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 LINC01356Q8N9X3 169 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 PMM1Q92871 262 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 TESCQ96BS2 214 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 DDIT4LQ96D03 193 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 SLC35A5Q9BS91 424 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 NAA11Q9BSU3 229 aaPredicted RBP8.48□□□□□ -1.05
USP39-212ENST00000465514 ROPN1BQ9BZX4 212 aaPredicted RBP8.48□□□□□ -1.05
USP39-212ENST00000465514 FKRPQ9H9S5 495 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 ROPN1Q9HAT0 212 aaPredicted RBP8.48□□□□□ -1.05
USP39-212ENST00000465514 SLC17A5Q9NRA2 495 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 SLC7A10Q9NS82 523 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 PARPBPQ9NWS1 579 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 UPB1Q9UBR1 384 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 MARCOQ9UEW3 520 aaPredicted RBP8.48□□□□□ -1.05
USP39-212ENST00000465514 DCTN4Q9UJW0 460 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 OSGIN1Q9UJX0 560 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 SLC9A8Q9Y2E8 581 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 AMDHD2Q9Y303 409 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 FLVCR1Q9Y5Y0 555 aa8.48□□□□□ -1.05
USP39-212ENST00000465514 AGAP5A6NIR3 686 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 ZNF208O43345 1280 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 SERPINE1P05121 402 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 MYZAPP0CAP1 466 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 BMP4P12644 408 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 APEX1P27695 318 aaKnown RBP8.47□□□□□ -1.05
USP39-212ENST00000465514 TACR3P29371 465 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 APOBEC3AP31941 199 aaPredicted RBP8.47□□□□□ -1.05
USP39-212ENST00000465514 S100A3P33764 101 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 SLC1A3P43003 542 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 LIMS1P48059 325 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 POLR2HP52434 150 aaKnown RBP8.47□□□□□ -1.05
USP39-212ENST00000465514 ARFIP2P53365 341 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 ABCE1P61221 599 aaKnown RBP8.47□□□□□ -1.05
USP39-212ENST00000465514 HPCAP84074 193 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 TGFBR3Q03167 851 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 CHRNB3Q05901 458 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 SCGB2A2Q13296 93 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 SLC17A1Q14916 467 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 CHI3L2Q15782 390 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 SPANXN4Q5MJ08 99 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 TSPO2Q5TGU0 170 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 RNF130Q86XS8 419 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 CMIPQ8IY22 773 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 SVOPLQ8N434 492 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 C17orf78Q8N4C9 275 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 ANKFN1Q8N957 763 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 C1orf162Q8NEQ5 155 aaPredicted RBP8.47□□□□□ -1.05
USP39-212ENST00000465514 SORCS2Q96PQ0 1159 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 C20orf27Q9GZN8 174 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 SLC38A1Q9H2H9 487 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.47□□□□□ -1.05
USP39-212ENST00000465514 RAP2CQ9Y3L5 183 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 PMF1-BGLAPU3KQ54 211 aa8.47□□□□□ -1.05
USP39-212ENST00000465514 ZC3H12DA2A288 527 aaKnown RBP8.46□□□□□ -1.06
USP39-212ENST00000465514 CFAP73A6NFT4 308 aa8.46□□□□□ -1.06
USP39-212ENST00000465514 ATP6V1G2-DDX39BF2Z307 99 aa8.46□□□□□ -1.06
USP39-212ENST00000465514 CHRM4P08173 479 aa8.46□□□□□ -1.06
USP39-212ENST00000465514 ARAFP10398 606 aa8.46□□□□□ -1.06
USP39-212ENST00000465514 LBPP18428 481 aa8.46□□□□□ -1.06
USP39-212ENST00000465514 CDH2P19022 906 aaPredicted RBP8.46□□□□□ -1.06
USP39-212ENST00000465514 ZFP36P26651 326 aaKnown RBP8.46□□□□□ -1.06
USP39-212ENST00000465514 MPGP29372 298 aa8.46□□□□□ -1.06
USP39-212ENST00000465514 RPL14P50914 215 aaKnown RBP8.46□□□□□ -1.06
USP39-212ENST00000465514 CLNS1AP54105 237 aaKnown RBP8.46□□□□□ -1.06
USP39-212ENST00000465514 CDH15P55291 814 aa8.46□□□□□ -1.06
USP39-212ENST00000465514 NME5P56597 212 aa8.46□□□□□ -1.06
USP39-212ENST00000465514 PRPS1P60891 318 aa8.46□□□□□ -1.06
USP39-212ENST00000465514 VSNL1P62760 191 aa8.46□□□□□ -1.06
USP39-212ENST00000465514 CEACAM7Q14002 265 aa8.46□□□□□ -1.06
USP39-212ENST00000465514 ZSWIM7Q19AV6 140 aa8.46□□□□□ -1.06
USP39-212ENST00000465514 DPY19L1Q2PZI1 675 aa8.46□□□□□ -1.06
USP39-212ENST00000465514 MST1LQ2TV78 715 aa8.46□□□□□ -1.06
USP39-212ENST00000465514 OTUD3Q5T2D3 398 aaPredicted RBP8.46□□□□□ -1.06
USP39-212ENST00000465514 PAQR6Q6TCH4 344 aa8.46□□□□□ -1.06
USP39-212ENST00000465514 LRRC74BQ6ZQY2 392 aa8.46□□□□□ -1.06
USP39-212ENST00000465514 USP43Q70EL4 1123 aa8.46□□□□□ -1.06
USP39-212ENST00000465514 TMEM99Q8N816 258 aa8.46□□□□□ -1.06
USP39-212ENST00000465514 ZIC4Q8N9L1 334 aa8.46□□□□□ -1.06
USP39-212ENST00000465514 WDR60Q8WVS4 1066 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms