RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 ZNF117Q03924 483 aa9.4□□□□□ -0.91
USP39-210ENST00000459775 TOMM34Q15785 309 aaPredicted RBP9.4□□□□□ -0.91
USP39-210ENST00000459775 ATP6AP1Q15904 470 aa9.4□□□□□ -0.91
USP39-210ENST00000459775 LIN52Q52LA3 116 aa9.4□□□□□ -0.91
USP39-210ENST00000459775 SPINK14Q6IE38 97 aa9.4□□□□□ -0.91
USP39-210ENST00000459775 H3F3CQ6NXT2 135 aa9.4□□□□□ -0.91
USP39-210ENST00000459775 KLHL24Q6TFL4 600 aa9.4□□□□□ -0.91
USP39-210ENST00000459775 GALNT16Q8N428 558 aa9.4□□□□□ -0.91
USP39-210ENST00000459775 OR2C3Q8N628 320 aa9.4□□□□□ -0.91
USP39-210ENST00000459775 TTC9Q92623 222 aa9.4□□□□□ -0.91
USP39-210ENST00000459775 RBM4BQ9BQ04 359 aaKnown RBP9.4□□□□□ -0.91
USP39-210ENST00000459775 RBM4Q9BWF3 364 aaKnown RBP9.4□□□□□ -0.91
USP39-210ENST00000459775 TBL1XR1Q9BZK7 514 aa9.4□□□□□ -0.91
USP39-210ENST00000459775 A4GNTQ9UNA3 340 aa9.4□□□□□ -0.91
USP39-210ENST00000459775 CSAG2Q9Y5P2 127 aa9.4□□□□□ -0.91
USP39-210ENST00000459775 CHCHD2Q9Y6H1 151 aaPredicted RBP9.4□□□□□ -0.91
USP39-210ENST00000459775 ENPP4Q9Y6X5 453 aa9.4□□□□□ -0.91
USP39-210ENST00000459775 HS6ST1O60243 411 aa9.39□□□□□ -0.91
USP39-210ENST00000459775 CD96P40200 585 aa9.39□□□□□ -0.91
USP39-210ENST00000459775 PSMD4P55036 377 aaKnown RBP9.39□□□□□ -0.91
USP39-210ENST00000459775 OC90Q02509 493 aaPredicted RBP9.39□□□□□ -0.91
USP39-210ENST00000459775 AIMP2Q13155 320 aaKnown RBP9.39□□□□□ -0.91
USP39-210ENST00000459775 NTRK2Q16620 822 aa9.39□□□□□ -0.91
USP39-210ENST00000459775 OTUD3Q5T2D3 398 aaPredicted RBP9.39□□□□□ -0.91
USP39-210ENST00000459775 OR2T5Q6IEZ7 315 aa9.39□□□□□ -0.91
USP39-210ENST00000459775 PCSK4Q6UW60 755 aa9.39□□□□□ -0.91
USP39-210ENST00000459775 GALNT4Q8N4A0 578 aa9.39□□□□□ -0.91
USP39-210ENST00000459775 DTX3Q8N9I9 347 aa9.39□□□□□ -0.91
USP39-210ENST00000459775 OR2T29Q8NH02 315 aa9.39□□□□□ -0.91
USP39-210ENST00000459775 DNAJA3Q96EY1 480 aa9.39□□□□□ -0.91
USP39-210ENST00000459775 FER1L6-AS2Q96M78 137 aa9.39□□□□□ -0.91
USP39-210ENST00000459775 ZNF570Q96NI8 536 aa9.39□□□□□ -0.91
USP39-210ENST00000459775 SIGLEC12Q96PQ1 595 aa9.39□□□□□ -0.91
USP39-210ENST00000459775 MCHR1Q99705 422 aa9.39□□□□□ -0.91
USP39-210ENST00000459775 EFHD1Q9BUP0 239 aa9.39□□□□□ -0.91
USP39-210ENST00000459775 LHPPQ9H008 270 aa9.39□□□□□ -0.91
USP39-210ENST00000459775 ZMAT3Q9HA38 289 aaKnown RBP9.39□□□□□ -0.91
USP39-210ENST00000459775 NMNAT1Q9HAN9 279 aaPredicted RBP9.39□□□□□ -0.91
USP39-210ENST00000459775 GPR83Q9NYM4 423 aa9.39□□□□□ -0.91
USP39-210ENST00000459775 MED11Q9P086 117 aa9.39□□□□□ -0.91
USP39-210ENST00000459775 MRTO4Q9UKD2 239 aaKnown RBP9.39□□□□□ -0.91
USP39-210ENST00000459775 POLHQ9Y253 713 aa9.39□□□□□ -0.91
USP39-210ENST00000459775 SLC9A8Q9Y2E8 581 aa9.39□□□□□ -0.91
USP39-210ENST00000459775 NINQ8N4C6 2090 aa9.39□□□□□ -0.91
USP39-210ENST00000459775 TRBV4-1A0A0J9YWV2 114 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 SHISA8B8ZZ34 492 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 GTPBP1O00178 669 aaKnown RBP9.38□□□□□ -0.91
USP39-210ENST00000459775 SOCS2O14508 198 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 CDC40O60508 579 aaKnown RBP eCLIP9.38□□□□□ -0.91
USP39-210ENST00000459775 SOX30O94993 753 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 WDPCPO95876 746 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 MST1P26927 711 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 SPIBQ01892 262 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 SKP2Q13309 424 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 PMS2P3Q13401 168 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 SEC23BQ15437 767 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 ENTPD8Q5MY95 495 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 RNF220Q5VTB9 566 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 CADM2Q8N3J6 435 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 FDCSPQ8NFU4 85 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 PHF10Q8WUB8 498 aaKnown RBP9.38□□□□□ -0.91
USP39-210ENST00000459775 RASSF5Q8WWW0 418 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 CENPNQ96H22 339 aaPredicted RBP9.38□□□□□ -0.91
USP39-210ENST00000459775 CITED2Q99967 270 aaPredicted RBP9.38□□□□□ -0.91
USP39-210ENST00000459775 SF3B5Q9BWJ5 86 aaKnown RBP9.38□□□□□ -0.91
USP39-210ENST00000459775 VCXQ9H320 206 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 COQ10BQ9H8M1 238 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 SMURF2Q9HAU4 748 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 CACYBPQ9HB71 228 aaKnown RBP9.38□□□□□ -0.91
USP39-210ENST00000459775 PROK2Q9HC23 129 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 TREM1Q9NP99 234 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 MAN2C1Q9NTJ4 1040 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 ACER3Q9NUN7 267 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 KLRF1Q9NZS2 232 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 DNAJB9Q9UBS3 223 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 SAMHD1Q9Y3Z3 626 aaKnown RBP9.38□□□□□ -0.91
USP39-210ENST00000459775 ZNF175Q9Y473 711 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 DOCK10Q96BY6 2186 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 A8MXE2 369 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 SYT5O00445 386 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 STAG3L3P0CL85 134 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 ZNF23P17027 643 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 RFC3P40938 356 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 CASP3P42574 277 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 GAS1P54826 345 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 EXOC3L2Q2M3D2 409 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 GTF2IRD2BQ6EKJ0 949 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 WDR88Q6ZMY6 472 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 GTF2IRD2Q86UP8 949 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 ARMC10Q8N2F6 343 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 CBR4Q8N4T8 237 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 CATSPER1Q8NEC5 780 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 THAP4Q8WY91 577 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 ABTB1Q969K4 478 aaPredicted RBP9.38□□□□□ -0.91
USP39-210ENST00000459775 CITED4Q96RK1 184 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 ZNF552Q9H707 407 aaPredicted RBP9.38□□□□□ -0.91
USP39-210ENST00000459775 METTL7AQ9H8H3 244 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 KLHL28Q9NXS3 571 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 KCNMB2Q9Y691 235 aa9.38□□□□□ -0.91
USP39-210ENST00000459775 ACACAQ13085 2346 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms