RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CTDSP1Q9GZU7 261 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 ELOVL6Q9H5J4 265 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 PPP1R3EQ9H7J1 279 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 MTHFD2LQ9H903 347 aaPredicted RBP4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 FKRPQ9H9S5 495 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 CALHM2Q9HA72 323 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 MEAF6Q9HAF1 191 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 ZFP64Q9NPA5 681 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 C14orf105Q9NVL8 296 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 FLRT1Q9NZU1 646 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 RHCGQ9UBD6 479 aa4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 SLC25A10Q9UBX3 287 aaPredicted RBP4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 PRPF19Q9UMS4 504 aaKnown RBP4.4□□□□□ -1.7
CCDC88A-209ENST00000456975 ABCB11O95342 1321 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 TRBV11-1A0A0K0K1C0 115 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 SLC22A23A1A5C7 686 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 CXorf65A6NEN9 183 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 IFNL4K9M1U5 179 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 SGK494L7N484 410 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 KLRC4O43908 158 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 FKBP6O75344 327 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 MOSPD3O75425 235 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 CA11O75493 328 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 TXNDC12O95881 172 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 TRUB2O95900 331 aaKnown RBP4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 MT-CYBP00156 380 aaPredicted RBP4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 CST4P01036 141 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 C1QBP02746 253 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 NUDT17P0C025 328 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 VSIG10L2P0DP72 767 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 SCGB1A1P11684 91 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 GABRA1P14867 456 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 HIST1H1BP16401 226 aaKnown RBP4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 GOT1P17174 413 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 TAL1P17542 331 aaPredicted RBP4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 RAB3BP20337 219 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 CD72P21854 359 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 FMO4P31512 558 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 AVPR1AP37288 418 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 PTGFRP43088 359 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 EFNA3P52797 238 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 LIMK2P53671 638 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 CLRN1P58418 232 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 TIRAPP58753 221 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 RPL19P84098 196 aaKnown RBP4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 RBBP4Q09028 425 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 TMEM115Q12893 351 aaPredicted RBP4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 ELAVL2Q12926 359 aaKnown RBP4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 BAATQ14032 418 aaPredicted RBP4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 LY6KQ17RY6 165 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 NRN1LQ496H8 165 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 SOWAHCQ53LP3 525 aaPredicted RBP4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 CLLU1Q5K131 121 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 NCMAPQ5T1S8 102 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 LRIF1Q5T3J3 769 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 PRSS55Q6UWB4 352 aaPredicted RBP4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 BAIAP2L2Q6UXY1 529 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 SNX29P2Q8IUI4 249 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 LILRA2Q8N149 483 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 OR52N4Q8NGI2 321 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 OR9Q1Q8NGQ5 310 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 OR13D1Q8NGV5 346 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 ZFP90Q8TF47 636 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 CLEC4CQ8WTT0 213 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 S100ZQ8WXG8 99 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 PIGTQ969N2 578 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 SLC35C1Q96A29 364 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 MIB2Q96AX9 1013 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 FAF2Q96CS3 445 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 RAB3CQ96E17 227 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 CD180Q99467 661 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 NAPGQ99747 312 aaPredicted RBP4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 UBQLN3Q9H347 655 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 Q9H521 79 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 RPF2Q9H7B2 306 aaKnown RBP4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 LHX9Q9NQ69 397 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 PDGFCQ9NRA1 345 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 PIGVQ9NUD9 493 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 SPG21Q9NZD8 308 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 CNOT2Q9NZN8 540 aaKnown RBP4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 IFNKQ9P0W0 207 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 SBDSQ9Y3A5 250 aaKnown RBP eCLIP4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 AP4S1Q9Y587 144 aa4.4□□□□□ -1.71
CCDC88A-209ENST00000456975 BDP1A6H8Y1 2624 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 A0A087X1B8 175 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 FAM240BA0A1B0GVZ2 78 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 FAM90A7PA6NKC0 464 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 SH2D7A6NKC9 451 aaPredicted RBP4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 FAM90A22PA8MWA6 464 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 FAM90A12PA8MX19 464 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 GRXCR1A8MXD5 290 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 FAM90A23PA8MXZ1 464 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 DFFAO00273 331 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 KLF11O14901 512 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 CDC14BO60729 498 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 KCNK2O95069 426 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 CLDN9O95484 217 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 RPN2P04844 631 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 SLC35G4P0C7Q5 338 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 GTF2F2P13984 249 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms