RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 NOSIPQ9Y314 301 aaKnown RBP6.81□□□□□ -1.32
SYNE1-213ENST00000448038 A0A087WUU8 490 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 hCG_1807616A0A1W2PRN6 198 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 APOBEC1P41238 236 aaKnown RBP6.81□□□□□ -1.32
SYNE1-213ENST00000448038 RBM34P42696 430 aaKnown RBP6.81□□□□□ -1.32
SYNE1-213ENST00000448038 PNLIPRP2P54317 469 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 TPTEP56180 551 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 DNASE1L3Q13609 305 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 SLC22A16Q86VW1 577 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 VN1R1Q9GZP7 353 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 WWTR1Q9GZV5 400 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 LAT2Q9GZY6 243 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 UBQLN3Q9H347 655 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 DPAGT1Q9H3H5 408 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 CHRNA9Q9UGM1 479 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 GLS2Q9UI32 602 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 LOC100509620A0A075B734 347 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 STMND1H3BQB6 276 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 MT-ATP6P00846 226 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 NFATC3Q12968 1075 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 RAB11BQ15907 218 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 OCLNQ16625 522 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 GLYR1Q49A26 553 aaPredicted RBP6.81□□□□□ -1.32
SYNE1-213ENST00000448038 OR7E24Q6IFN5 339 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 TCTN3Q6NUS6 607 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 C3orf33Q6P1S2 294 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 SLC35D2Q76EJ3 337 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 MRPL21Q7Z2W9 205 aaKnown RBP6.81□□□□□ -1.32
SYNE1-213ENST00000448038 YRDCQ86U90 279 aaKnown RBP6.81□□□□□ -1.32
SYNE1-213ENST00000448038 SLC25A43Q8WUT9 341 aaPredicted RBP6.81□□□□□ -1.32
SYNE1-213ENST00000448038 CCDC107Q8WV48 283 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 FCAMRQ8WWV6 532 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 NEDD4LQ96PU5 975 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 PRRX2Q99811 253 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 ELOVL3Q9HB03 270 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 BABAM2Q9NXR7 383 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 LOC102725191A0A1B0GVB3 256 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 MEGF11A6BM72 1044 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 ASPDHA6ND91 283 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 PRKYO43930 277 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 HOXD12P35452 270 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 WNT3P56703 355 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 SLC14A1Q13336 389 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 TRIP6Q15654 476 aaKnown RBP6.81□□□□□ -1.32
SYNE1-213ENST00000448038 NHSL2Q5HYW2 709 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 AGAP7PQ5VUJ5 663 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 PMS2CLQ68D20 193 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 LAIR1Q6GTX8 287 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 GDPGP1Q6ZNW5 385 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 LRRC18Q8N456 261 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 OR1N1Q8NGS0 311 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 GOT1L1Q8NHS2 421 aaPredicted RBP6.81□□□□□ -1.32
SYNE1-213ENST00000448038 AGAP4Q96P64 663 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 SCGB3A2Q96PL1 93 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 NUDT9Q9BW91 350 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 SEMA4CQ9C0C4 833 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 OR51E2Q9H255 320 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 CALHM2Q9HA72 323 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 ZNF221Q9UK13 617 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 MOKQ9UQ07 419 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 ZNF593O00488 134 aaPredicted RBP6.81□□□□□ -1.32
SYNE1-213ENST00000448038 SLC16A6O15403 523 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 TNFSF14O43557 240 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 PIGAP37287 484 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 GLP1RP43220 463 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 PCBD1P61457 104 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 FOXC1Q12948 553 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 TBCEQ15813 527 aaPredicted RBP6.81□□□□□ -1.32
SYNE1-213ENST00000448038 ZFP69Q49AA0 526 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 OR2G6Q5TZ20 316 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 NXNL2Q5VZ03 156 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 FAM205BPQ63HN1 556 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 ENTHD1Q8IYW4 607 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 SLC37A3Q8NCC5 494 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 ACOT12Q8WYK0 555 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 ZNF582Q96NG8 517 aaPredicted RBP6.81□□□□□ -1.32
SYNE1-213ENST00000448038 SYT4Q9H2B2 425 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 OR51B6Q9H340 312 aa6.81□□□□□ -1.32
SYNE1-213ENST00000448038 ZDBF2Q9HCK1 2354 aa6.8□□□□□ -1.32
SYNE1-213ENST00000448038 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.8□□□□□ -1.32
SYNE1-213ENST00000448038 TMEM269A0A1B0GVZ9 245 aa6.8□□□□□ -1.32
SYNE1-213ENST00000448038 TCRBV5S2A0A599 114 aa6.8□□□□□ -1.32
SYNE1-213ENST00000448038 PLOD2O00469 737 aa6.8□□□□□ -1.32
SYNE1-213ENST00000448038 TBX19O60806 448 aa6.8□□□□□ -1.32
SYNE1-213ENST00000448038 AKR7A3O95154 331 aa6.8□□□□□ -1.32
SYNE1-213ENST00000448038 FBXO45P0C2W1 286 aa6.8□□□□□ -1.32
SYNE1-213ENST00000448038 TMEM225BP0DP42 221 aa6.8□□□□□ -1.32
SYNE1-213ENST00000448038 UBE2IP63279 158 aaKnown RBP6.8□□□□□ -1.32
SYNE1-213ENST00000448038 PUDPQ08623 228 aa6.8□□□□□ -1.32
SYNE1-213ENST00000448038 ZIC1Q15915 447 aa6.8□□□□□ -1.32
SYNE1-213ENST00000448038 ACSM3Q53FZ2 586 aa6.8□□□□□ -1.32
SYNE1-213ENST00000448038 TMEM244Q5VVB8 128 aa6.8□□□□□ -1.32
SYNE1-213ENST00000448038 LANCL3Q6ZV70 420 aa6.8□□□□□ -1.32
SYNE1-213ENST00000448038 H1FNTQ75WM6 255 aaPredicted RBP6.8□□□□□ -1.32
SYNE1-213ENST00000448038 NDUFAF7Q7L592 441 aa6.8□□□□□ -1.32
SYNE1-213ENST00000448038 WDR5BQ86VZ2 330 aa6.8□□□□□ -1.32
SYNE1-213ENST00000448038 KDM8Q8N371 416 aa6.8□□□□□ -1.32
SYNE1-213ENST00000448038 NPRL2Q8WTW4 380 aa6.8□□□□□ -1.32
SYNE1-213ENST00000448038 RFT1Q96AA3 541 aa6.8□□□□□ -1.32
SYNE1-213ENST00000448038 OR10A2Q9H208 303 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms