RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 PQLC1Q8N2U9 271 aa14.15□□□□□ -0.14
USP40-206ENST00000443711 GALNT11Q8NCW6 608 aa14.15□□□□□ -0.14
USP40-206ENST00000443711 OR5K1Q8NHB7 308 aa14.15□□□□□ -0.14
USP40-206ENST00000443711 CPNE4Q96A23 557 aaPredicted RBP14.15□□□□□ -0.14
USP40-206ENST00000443711 BPIFA2Q96DR5 249 aa14.15□□□□□ -0.14
USP40-206ENST00000443711 NAA11Q9BSU3 229 aaPredicted RBP14.15□□□□□ -0.14
USP40-206ENST00000443711 SEMA6AQ9H2E6 1030 aa14.15□□□□□ -0.14
USP40-206ENST00000443711 C20orf141Q9NUB4 165 aa14.15□□□□□ -0.14
USP40-206ENST00000443711 RRP15Q9Y3B9 282 aaKnown RBP14.15□□□□□ -0.14
USP40-206ENST00000443711 CHD6Q8TD26 2715 aa14.15□□□□□ -0.14
USP40-206ENST00000443711 BSNQ9UPA5 3926 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 CLCA1A8K7I4 914 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 FTCDNL1E5RQL4 147 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 OR7A10O76100 309 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 HIST1H2ABP04908 130 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 FUT1P19526 365 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 ENPP1P22413 925 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 CBLP22681 906 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 NUP107P57740 925 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 LTBQ06643 244 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 SHQ1Q6PI26 577 aaKnown RBP14.14□□□□□ -0.15
USP40-206ENST00000443711 TMPRSS11FQ6ZWK6 438 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 HIST3H2AQ7L7L0 130 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 TMEM179BQ7Z7N9 219 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 DOLPP1Q86YN1 238 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 HIPK1Q86Z02 1210 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 SVOPLQ8N434 492 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 GNPDA2Q8TDQ7 276 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 HIST1H2ACQ93077 130 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 ZNF845Q96IR2 970 aaPredicted RBP14.14□□□□□ -0.15
USP40-206ENST00000443711 MOGAT1Q96PD6 335 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 ASPNQ9BXN1 380 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 SRXN1Q9BYN0 137 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 PRRG4Q9BZD6 226 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 TP63Q9H3D4 680 aaPredicted RBP14.14□□□□□ -0.15
USP40-206ENST00000443711 DCLRE1BQ9H816 532 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 FKRPQ9H9S5 495 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 CALHM2Q9HA72 323 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 NANSQ9NR45 359 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 PDP1Q9P0J1 537 aaPredicted RBP14.14□□□□□ -0.15
USP40-206ENST00000443711 ZNF229Q9UJW7 825 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 MCTS1Q9ULC4 181 aaKnown RBP14.14□□□□□ -0.15
USP40-206ENST00000443711 ZNF175Q9Y473 711 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 CORINQ9Y5Q5 1042 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 KALRNO60229 2985 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 NBASA2RRP1 2371 aa14.14□□□□□ -0.15
USP40-206ENST00000443711 ARHGAP21Q5T5U3 1957 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 ARRDC5A6NEK1 342 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 EFCAB9A8MZ26 197 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 LRRN3E7EW58 273 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 FZD7O75084 574 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 ANPEPP15144 967 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 ZNF23P17027 643 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 MAKP20794 623 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 ACVR2AP27037 513 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 GRPRP30550 384 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 OMPP47874 163 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 LAPTM4AQ15012 233 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 RCN1Q15293 331 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 ZNF239Q16600 458 aaKnown RBP14.13□□□□□ -0.15
USP40-206ENST00000443711 ACSF3Q4G176 576 aaPredicted RBP14.13□□□□□ -0.15
USP40-206ENST00000443711 C1orf185Q5T7R7 199 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 ZNF770Q6IQ21 691 aaPredicted RBP14.13□□□□□ -0.15
USP40-206ENST00000443711 PPP4R4Q6NUP7 873 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 C1orf94Q6P1W5 598 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 PAQR6Q6TCH4 344 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 SLC46A3Q7Z3Q1 461 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 ZER1Q7Z7L7 766 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 ADGRE4PQ86SQ3 457 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 ATCAYQ86WG3 371 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 OR10G2Q8NGC3 310 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 LIPHQ8WWY8 451 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 FAM46AQ96IP4 442 aaKnown RBP14.13□□□□□ -0.15
USP40-206ENST00000443711 UCN2Q96RP3 112 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 TRIB1Q96RU8 372 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 C6orf203Q9P0P8 240 aaPredicted RBP14.13□□□□□ -0.15
USP40-206ENST00000443711 RALYQ9UKM9 306 aaKnown RBP14.13□□□□□ -0.15
USP40-206ENST00000443711 MGAT4BQ9UQ53 548 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 POLEQ07864 2286 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 CFAP46Q8IYW2 2715 aa14.13□□□□□ -0.15
USP40-206ENST00000443711 ESPL1Q14674 2120 aa14.12□□□□□ -0.15
USP40-206ENST00000443711 CD8B2A6NJW9 211 aa14.12□□□□□ -0.15
USP40-206ENST00000443711 SLC22A20A6NK97 555 aa14.12□□□□□ -0.15
USP40-206ENST00000443711 G3V2T6 193 aa14.12□□□□□ -0.15
USP40-206ENST00000443711 AKR7A3O95154 331 aa14.12□□□□□ -0.15
USP40-206ENST00000443711 SAGP10523 405 aaPredicted RBP14.12□□□□□ -0.15
USP40-206ENST00000443711 FCGR2AP12318 317 aa14.12□□□□□ -0.15
USP40-206ENST00000443711 GPR4P46093 362 aa14.12□□□□□ -0.15
USP40-206ENST00000443711 SLC9A3P48764 834 aa14.12□□□□□ -0.15
USP40-206ENST00000443711 PMS2P3Q13401 168 aa14.12□□□□□ -0.15
USP40-206ENST00000443711 PON3Q15166 354 aa14.12□□□□□ -0.15
USP40-206ENST00000443711 IGFBP7Q16270 282 aa14.12□□□□□ -0.15
USP40-206ENST00000443711 OTUD3Q5T2D3 398 aaPredicted RBP14.12□□□□□ -0.15
USP40-206ENST00000443711 NSUN5P2Q63ZY6 315 aa14.12□□□□□ -0.15
USP40-206ENST00000443711 GTF2IRD2BQ6EKJ0 949 aa14.12□□□□□ -0.15
USP40-206ENST00000443711 PGBD2Q6P3X8 592 aa14.12□□□□□ -0.15
USP40-206ENST00000443711 H1FNTQ75WM6 255 aaPredicted RBP14.12□□□□□ -0.15
USP40-206ENST00000443711 P4HA3Q7Z4N8 544 aa14.12□□□□□ -0.15
USP40-206ENST00000443711 GTF2IRD2Q86UP8 949 aa14.12□□□□□ -0.15
USP40-206ENST00000443711 ZDHHC13Q8IUH4 622 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms