RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 ANP32EQ9BTT0 268 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 KRTAP2-2Q9BYT5 123 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 PLGRKTQ9HBL7 147 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 TREM2Q9NZC2 230 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 CLEC4EQ9ULY5 219 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 PLEKHH1Q9ULM0 1364 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 TTC21BQ7Z4L5 1316 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 CDK13Q14004 1512 aaKnown RBP4.47□□□□□ -1.69
USP54-206ENST00000433394 MYO5CQ9NQX4 1742 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 IGHV1OR15-1A0A075B7D0 117 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 TCRBV9S1A1TA0A576 114 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 HAS3O00219 553 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 KLK3P07288 261 aaPredicted RBP4.47□□□□□ -1.69
USP54-206ENST00000433394 GPM6AP51674 278 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 SUCLG1P53597 346 aaKnown RBP4.47□□□□□ -1.69
USP54-206ENST00000433394 TLE4Q04727 773 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 MICBQ29980 383 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 ISXQ2M1V0 245 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 CXCL17Q6UXB2 119 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 LRRC74BQ6ZQY2 392 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 PGAP1Q75T13 922 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 PAQR7Q86WK9 346 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 NUDCD3Q8IVD9 361 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 OR2L13Q8N349 312 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 OR10H4Q8NGA5 316 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 OR56B4Q8NH76 319 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 UFD1Q92890 307 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 RASD2Q96D21 266 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 VSIG2Q96IQ7 327 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 PGLYRP4Q96LB8 373 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 CHRDL1Q9BU40 450 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 SELENOIQ9C0D9 397 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 VCPKMTQ9H867 229 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 METTL7AQ9H8H3 244 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 FOLH1BQ9HBA9 442 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 THUMPD1Q9NXG2 353 aaKnown RBP4.47□□□□□ -1.69
USP54-206ENST00000433394 CD274Q9NZQ7 290 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 TNRQ92752 1358 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 WDR7Q9Y4E6 1490 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 ERCC6L2Q5T890 1561 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 CFAP74Q9C0B2 1584 aa4.47□□□□□ -1.69
USP54-206ENST00000433394 KIAA1107Q9UPP5 1409 aa4.46□□□□□ -1.69
USP54-206ENST00000433394 PREX2Q70Z35 1606 aa4.46□□□□□ -1.69
USP54-206ENST00000433394 ABCA9Q8IUA7 1624 aa4.46□□□□□ -1.69
USP54-206ENST00000433394 PTPN23Q9H3S7 1636 aa4.46□□□□□ -1.69
USP54-206ENST00000433394 ABCC10Q5T3U5 1492 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 SHANK2Q9UPX8 1470 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 ROCK1Q13464 1354 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 PPIAL4EA0A075B759 164 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 TUBAL3A6NHL2 446 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 DYNC1I1O14576 645 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 TOM1O60784 492 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 SNAPINO95295 136 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 PPIAL4FP0DN26 164 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 CD1CP29017 333 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 SHMT2P34897 504 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 HSD17B2P37059 387 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 TAGLN2P37802 199 aaKnown RBP4.46□□□□□ -1.7
USP54-206ENST00000433394 QARSP47897 775 aaKnown RBP4.46□□□□□ -1.7
USP54-206ENST00000433394 DIO3P55073 304 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 TIMM10P62072 90 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 OXA1LQ15070 435 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 PARP15Q460N3 678 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 OR52E8Q6IFG1 317 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 ZNF571Q7Z3V5 609 aaPredicted RBP4.46□□□□□ -1.7
USP54-206ENST00000433394 FAM228AQ86W67 206 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 C17orf82Q86X59 251 aaPredicted RBP4.46□□□□□ -1.7
USP54-206ENST00000433394 ZNF677Q86XU0 584 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 EGFL6Q8IUX8 553 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 TMEM252Q8N6L7 170 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 ALLCQ8N6M5 410 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 CCDC71LQ8N9Z2 235 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 FNDC5Q8NAU1 212 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 OR2AP1Q8NGE2 309 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 MRAPQ8TCY5 172 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 FAM122AQ96E09 287 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 CNOT6LQ96LI5 555 aaKnown RBP4.46□□□□□ -1.7
USP54-206ENST00000433394 EBF4Q9BQW3 602 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 TRIM62Q9BVG3 475 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 VPS37BQ9H9H4 285 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 NMRAL1Q9HBL8 299 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 TM9SF3Q9HD45 589 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 VNN3Q9NY84 501 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 SPATA7Q9P0W8 599 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 ONECUT1Q9UBC0 465 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 CDC42BPAQ5VT25 1732 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 RIMBP3CA6NJZ7 1639 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 RIMBP3BA6NNM3 1639 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 RIMBP3Q9UFD9 1639 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 MAGI3Q5TCQ9 1506 aa4.46□□□□□ -1.7
USP54-206ENST00000433394 GPATCH8Q9UKJ3 1502 aaKnown RBP4.46□□□□□ -1.7
USP54-206ENST00000433394 ARHGEF5Q12774 1597 aa4.45□□□□□ -1.7
USP54-206ENST00000433394 CFAP65Q6ZU64 1925 aaKnown RBP4.45□□□□□ -1.7
USP54-206ENST00000433394 SGK1O00141 431 aa4.45□□□□□ -1.7
USP54-206ENST00000433394 CDX4O14627 284 aaPredicted RBP4.45□□□□□ -1.7
USP54-206ENST00000433394 ZNF264O43296 627 aa4.45□□□□□ -1.7
USP54-206ENST00000433394 LYPD3O95274 346 aa4.45□□□□□ -1.7
USP54-206ENST00000433394 LGI1O95970 557 aa4.45□□□□□ -1.7
USP54-206ENST00000433394 GABRR1P24046 479 aa4.45□□□□□ -1.7
USP54-206ENST00000433394 BIDP55957 195 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms