RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 RAB6AP20340 208 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 PTAFRP25105 342 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 SLC5A2P31639 672 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 CLDN17P56750 224 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 EDDM3BP56851 147 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 GRB2P62993 217 aaKnown RBP6.4□□□□□ -1.38
SCN1A-204ENST00000423058 VWA2Q5GFL6 755 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 SLC35F3Q8IY50 421 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 CBARPQ8N350 705 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-204ENST00000423058 DDX51Q8N8A6 666 aaKnown RBP eCLIP6.4□□□□□ -1.38
SCN1A-204ENST00000423058 L3HYPDHQ96EM0 354 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 ZNF845Q96IR2 970 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-204ENST00000423058 ZBED3Q96IU2 234 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-204ENST00000423058 OR52A5Q9H2C5 316 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 STARD5Q9NSY2 213 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 SLC2A8Q9NY64 477 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 HSFX1Q9UBD0 423 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 YARS2Q9Y2Z4 477 aaKnown RBP6.4□□□□□ -1.38
SCN1A-204ENST00000423058 LGALS8O00214 317 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 OR7C1O76099 320 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-204ENST00000423058 ZP2Q05996 745 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 C6orf15Q6UXA7 325 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-204ENST00000423058 RNF113BQ8IZP6 322 aaKnown RBP6.4□□□□□ -1.38
SCN1A-204ENST00000423058 SLC39A7Q92504 469 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 KCNJ15Q99712 375 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 C16orf70Q9BSU1 422 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 FUNDC2Q9BWH2 189 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 ZNF334Q9HCZ1 680 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-204ENST00000423058 TXNRD2Q9NNW7 524 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 FBXO4Q9UKT5 387 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 A0A1W2PQL4 384 aaPredicted RBP6.4□□□□□ -1.39
SCN1A-204ENST00000423058 FIGNL2A6NMB9 653 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 MKRN2OSH3BPM6 223 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 IMPA2O14732 288 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 DEGS1O15121 323 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 HTR3DQ70Z44 454 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 OR1S2Q8NGQ3 325 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 ZMYND19Q96E35 227 aaPredicted RBP6.4□□□□□ -1.39
SCN1A-204ENST00000423058 GFOD1Q9NXC2 390 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 SLCO3A1Q9UIG8 710 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 GPR52Q9Y2T5 361 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 LAMB1P07942 1786 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 SLC22A23A1A5C7 686 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 NPIPB15A6NHN6 443 aaPredicted RBP6.4□□□□□ -1.39
SCN1A-204ENST00000423058 GFRA2O00451 464 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 CLDN1O95832 211 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 STSP08842 583 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 DPP4P27487 766 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 PPP1R3AQ16821 1122 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 HRASLS5Q96KN8 279 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 ZDHHC5Q9C0B5 715 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 SVILO95425 2214 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 COL3A1P02461 1466 aaPredicted RBP6.4□□□□□ -1.39
SCN1A-204ENST00000423058 ZNFX1Q9P2E3 1918 aaKnown RBP6.4□□□□□ -1.39
SCN1A-204ENST00000423058 SLC5A10A0PJK1 596 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 H3BSA7 217 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 C1orf105O95561 183 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 IL2RAP01589 272 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 MGST1P10620 155 aaKnown RBP6.4□□□□□ -1.39
SCN1A-204ENST00000423058 DTYMKP23919 212 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 VEGFBP49765 207 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 CLDN6P56747 220 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 SHEQ5VZ18 495 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 LINC00696Q6ZRV3 163 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 HMGN2P46Q86SG4 172 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 OR4K5Q8NGD3 323 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 OR5K2Q8NHB8 316 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 ZCCHC4Q9H5U6 513 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 SLC22A11Q9NSA0 550 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 QPCTLQ9NXS2 382 aa6.4□□□□□ -1.39
SCN1A-204ENST00000423058 WASH4PA8MWX3 477 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 FOXO6A8MYZ6 492 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 PRICKLE3O43900 615 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-204ENST00000423058 SLC16A7O60669 478 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 RETP07949 1114 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 UBBP0CG47 229 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 CPMP14384 443 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 FDXRP22570 491 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 RPS27AP62979 156 aaKnown RBP6.39□□□□□ -1.39
SCN1A-204ENST00000423058 UBA52P62987 128 aaKnown RBP6.39□□□□□ -1.39
SCN1A-204ENST00000423058 RAB40BQ12829 278 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 TRIM61Q5EBN2 209 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 RPS26P11Q5JNZ5 115 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-204ENST00000423058 ANKRD54Q6NXT1 300 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 ESPNLQ6ZVH7 1005 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 LSMEM2Q8N112 164 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 MRPL43Q8N983 215 aaKnown RBP6.39□□□□□ -1.39
SCN1A-204ENST00000423058 OR10J5Q8NHC4 309 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 ZFP90Q8TF47 636 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 CDS1Q92903 461 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 EMG1Q92979 244 aaKnown RBP6.39□□□□□ -1.39
SCN1A-204ENST00000423058 MOCOSQ96EN8 888 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 SLC46A1Q96NT5 459 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 RDH14Q9HBH5 336 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 AIG1Q9NVV5 245 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 MOKQ9UQ07 419 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 NPFFR2Q9Y5X5 522 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 METTL15A6NJ78 407 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 SNAPINO95295 136 aa6.39□□□□□ -1.39
SCN1A-204ENST00000423058 SPP1P10451 314 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms