RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 HIF3AQ9Y2N7 669 aa7.66□□□□□ -1.18
USP54-203ENST00000418501 HDGFL3Q9Y3E1 203 aa7.66□□□□□ -1.18
USP54-203ENST00000418501 FADS1O60427 444 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 RAD1O60671 282 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 ATP6V1G1O75348 118 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 VAMP5O95183 116 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 LCKP06239 509 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 MAKP20794 623 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 NTRK2Q16620 822 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 ZNF404Q494X3 552 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 CCDC103Q8IW40 242 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 UEVLDQ8IX04 471 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 ZNF454Q8N9F8 522 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 MINDY2Q8NBR6 621 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 SLC37A3Q8NCC5 494 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 OR4K13Q8NH42 304 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 GPR119Q8TDV5 335 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 KCNE4Q8WWG9 221 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 ZNF426Q9BUY5 554 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 ADAM19Q9H013 955 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 OSGIN1Q9UJX0 560 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 CDV3Q9UKY7 258 aaKnown RBP7.65□□□□□ -1.18
USP54-203ENST00000418501 TCFL5Q9UL49 500 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 POLR1DQ9Y2S0 133 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 GPR52Q9Y2T5 361 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 ZNF879B4DU55 563 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 TMEM127O75204 238 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 PTP4A3O75365 173 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 GLCEO94923 617 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 ZIC2O95409 532 aaPredicted RBP7.65□□□□□ -1.18
USP54-203ENST00000418501 PCMT1P22061 227 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 C21orf33P30042 268 aaPredicted RBP7.65□□□□□ -1.18
USP54-203ENST00000418501 SDC2P34741 201 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 PSMD7P51665 324 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 TLE3Q04726 772 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 ZNF829Q3KNS6 432 aaPredicted RBP7.65□□□□□ -1.18
USP54-203ENST00000418501 XAF1Q6GPH4 301 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 H1FNTQ75WM6 255 aaPredicted RBP7.65□□□□□ -1.18
USP54-203ENST00000418501 CHMP1BQ7LBR1 199 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 ZAR1Q86SH2 424 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 PLCZ1Q86YW0 608 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 NFAM1Q8NET5 270 aaPredicted RBP7.65□□□□□ -1.18
USP54-203ENST00000418501 SMPDL3BQ92485 455 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 ADAD1Q96M93 576 aaKnown RBP7.65□□□□□ -1.18
USP54-203ENST00000418501 TTYH2Q9BSA4 534 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 TOR4AQ9NXH8 423 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 BABAM2Q9NXR7 383 aa7.65□□□□□ -1.18
USP54-203ENST00000418501 IGHV1-45A0A0A0MS14 117 aa7.65□□□□□ -1.19
USP54-203ENST00000418501 OR2W5A6NFC9 320 aa7.65□□□□□ -1.19
USP54-203ENST00000418501 TNFRSF10AO00220 468 aa7.65□□□□□ -1.19
USP54-203ENST00000418501 GPRIN2O60269 458 aa7.65□□□□□ -1.19
USP54-203ENST00000418501 CCL4P13236 92 aa7.65□□□□□ -1.19
USP54-203ENST00000418501 PRKCAP17252 672 aa7.65□□□□□ -1.19
USP54-203ENST00000418501 OR2B6P58173 313 aa7.65□□□□□ -1.19
USP54-203ENST00000418501 SPEM2Q0P670 501 aa7.65□□□□□ -1.19
USP54-203ENST00000418501 ATP1A4Q13733 1029 aa7.65□□□□□ -1.19
USP54-203ENST00000418501 IRF3Q14653 427 aa7.65□□□□□ -1.19
USP54-203ENST00000418501 AADACL4Q5VUY2 407 aa7.65□□□□□ -1.19
USP54-203ENST00000418501 TMEM81Q6P7N7 255 aa7.65□□□□□ -1.19
USP54-203ENST00000418501 LINC00114Q6XXX2 140 aa7.65□□□□□ -1.19
USP54-203ENST00000418501 TMPRSS12Q86WS5 348 aa7.65□□□□□ -1.19
USP54-203ENST00000418501 KIF18BQ86Y91 864 aa7.65□□□□□ -1.19
USP54-203ENST00000418501 SLC35F2Q8IXU6 374 aa7.65□□□□□ -1.19
USP54-203ENST00000418501 SYS1Q8N2H4 156 aa7.65□□□□□ -1.19
USP54-203ENST00000418501 SIMC1Q8NDZ2 872 aa7.65□□□□□ -1.19
USP54-203ENST00000418501 KATNB1Q9BVA0 655 aa7.65□□□□□ -1.19
USP54-203ENST00000418501 ALG8Q9BVK2 526 aa7.65□□□□□ -1.19
USP54-203ENST00000418501 CDADC1Q9BWV3 514 aa7.65□□□□□ -1.19
USP54-203ENST00000418501 C6orf62Q9GZU0 229 aaPredicted RBP7.65□□□□□ -1.19
USP54-203ENST00000418501 CDCP1Q9H5V8 836 aa7.65□□□□□ -1.19
USP54-203ENST00000418501 APMAPQ9HDC9 416 aa7.65□□□□□ -1.19
USP54-203ENST00000418501 PAK1IP1Q9NWT1 392 aaPredicted RBP7.65□□□□□ -1.19
USP54-203ENST00000418501 MDC1Q14676 2089 aaKnown RBP7.65□□□□□ -1.19
USP54-203ENST00000418501 A0A1W2PPW3 197 aa7.64□□□□□ -1.19
USP54-203ENST00000418501 C12orf71A8MTZ7 269 aa7.64□□□□□ -1.19
USP54-203ENST00000418501 E9PQ18 207 aa7.64□□□□□ -1.19
USP54-203ENST00000418501 ITGA10O75578 1167 aa7.64□□□□□ -1.19
USP54-203ENST00000418501 CBR3O75828 277 aa7.64□□□□□ -1.19
USP54-203ENST00000418501 OR2J2O76002 312 aa7.64□□□□□ -1.19
USP54-203ENST00000418501 SDHBP21912 280 aa7.64□□□□□ -1.19
USP54-203ENST00000418501 GABRA5P31644 462 aa7.64□□□□□ -1.19
USP54-203ENST00000418501 DLSTP36957 453 aa7.64□□□□□ -1.19
USP54-203ENST00000418501 SLC15A1P46059 708 aa7.64□□□□□ -1.19
USP54-203ENST00000418501 CYB561P49447 251 aa7.64□□□□□ -1.19
USP54-203ENST00000418501 DSCR4P56555 118 aaPredicted RBP7.64□□□□□ -1.19
USP54-203ENST00000418501 ZNF385CQ66K41 422 aaPredicted RBP7.64□□□□□ -1.19
USP54-203ENST00000418501 KLHL24Q6TFL4 600 aa7.64□□□□□ -1.19
USP54-203ENST00000418501 HIST2H2ABQ8IUE6 130 aaPredicted RBP7.64□□□□□ -1.19
USP54-203ENST00000418501 ACOT12Q8WYK0 555 aa7.64□□□□□ -1.19
USP54-203ENST00000418501 UTP23Q9BRU9 249 aaKnown RBP7.64□□□□□ -1.19
USP54-203ENST00000418501 ZNF160Q9HCG1 818 aa7.64□□□□□ -1.19
USP54-203ENST00000418501 MRPL39Q9NYK5 338 aaKnown RBP7.64□□□□□ -1.19
USP54-203ENST00000418501 LAMP5Q9UJQ1 280 aa7.64□□□□□ -1.19
USP54-203ENST00000418501 FKBP7Q9Y680 259 aa7.64□□□□□ -1.19
USP54-203ENST00000418501 ABCA7Q8IZY2 2146 aa7.64□□□□□ -1.19
USP54-203ENST00000418501 BHLHE40O14503 412 aa7.64□□□□□ -1.19
USP54-203ENST00000418501 CASKO14936 926 aa7.64□□□□□ -1.19
USP54-203ENST00000418501 KHDRBS3O75525 346 aaKnown RBP7.64□□□□□ -1.19
USP54-203ENST00000418501 RGS9O75916 674 aaPredicted RBP7.64□□□□□ -1.19
USP54-203ENST00000418501 ACVR1BP36896 505 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms