RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 ZNF708P17019 499 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 BMP7P18075 431 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 POU3F2P20265 443 aaPredicted RBP12.81□□□□□ -0.36
SF3B1-204ENST00000414963 LHX2P50458 406 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 CRISP1P54107 249 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 NPRL3Q12980 569 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 ZNF239Q16600 458 aaKnown RBP12.81□□□□□ -0.36
SF3B1-204ENST00000414963 CTU2Q2VPK5 515 aaKnown RBP12.81□□□□□ -0.36
SF3B1-204ENST00000414963 ZBED5Q49AG3 693 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 ZNF324BQ6AW86 544 aaPredicted RBP12.81□□□□□ -0.36
SF3B1-204ENST00000414963 RPL13AP3Q6NVV1 102 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 C19orf48Q6RUI8 117 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 ZNF620Q6ZNG0 422 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 ESPNLQ6ZVH7 1005 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 LSRQ86X29 649 aaPredicted RBP12.81□□□□□ -0.36
SF3B1-204ENST00000414963 KIF18BQ86Y91 864 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 C10orf53Q8N6V4 93 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 LRRC17Q8N6Y2 441 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 TFAP2CQ92754 450 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 OSTF1Q92882 214 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 ABTB1Q969K4 478 aaPredicted RBP12.81□□□□□ -0.36
SF3B1-204ENST00000414963 ADGRG7Q96K78 797 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 OR5B2Q96R09 309 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 TNFRSF13CQ96RJ3 184 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 SLC25A18Q9H1K4 315 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 TMEM185BQ9H7F4 350 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 FAM118AQ9NWS6 357 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 ALKBH4Q9NXW9 302 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 MRPL39Q9NYK5 338 aaKnown RBP12.81□□□□□ -0.36
SF3B1-204ENST00000414963 HIF3AQ9Y2N7 669 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 LRRC42Q9Y546 428 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 CDH10Q9Y6N8 788 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 ITPR1Q14643 2758 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 PIEZO2Q9H5I5 2752 aa12.81□□□□□ -0.36
SF3B1-204ENST00000414963 A0A0J9YW62 118 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 LRRN3E7EW58 273 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 AQP7O14520 342 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 HIST1H2ABP04908 130 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 UQCRC1P31930 480 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 SFTPDP35247 375 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 POLR2IP36954 125 aaKnown RBP12.8□□□□□ -0.36
SF3B1-204ENST00000414963 DIO1P49895 249 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 AGFG1P52594 562 aaKnown RBP12.8□□□□□ -0.36
SF3B1-204ENST00000414963 CLDN15P56746 228 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 CLDN18P56856 261 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 CLDN20P56880 219 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 FXYD6P3P58550 94 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 RAC3P60763 192 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 PRPS1P60891 318 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 SLC35A1P78382 337 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 ADARB1P78563 741 aaKnown RBP12.8□□□□□ -0.36
SF3B1-204ENST00000414963 H3F3AP84243 136 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 SGCBQ16585 318 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 ZIK1Q3SY52 487 aaPredicted RBP12.8□□□□□ -0.36
SF3B1-204ENST00000414963 SLC36A3Q495N2 470 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 SMARCD3Q6STE5 483 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 HIST3H2AQ7L7L0 130 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 DHRSXQ8N5I4 330 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 ADPRHL1Q8NDY3 354 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 OR13C2Q8NGS9 318 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 OR5J2Q8NH18 312 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 HIST1H2ACQ93077 130 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 TACO1Q9BSH4 297 aaKnown RBP12.8□□□□□ -0.36
SF3B1-204ENST00000414963 TAPBPLQ9BX59 468 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 LDAHQ9H6V9 325 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 MCCC2Q9HCC0 563 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 FANCFQ9NPI8 374 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 RAB26Q9ULW5 256 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 B3GALT5Q9Y2C3 310 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 LIPGQ9Y5X9 500 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 NCKAP5O14513 1909 aa12.8□□□□□ -0.36
SF3B1-204ENST00000414963 TLN1Q9Y490 2541 aaKnown RBP12.79□□□□□ -0.36
SF3B1-204ENST00000414963 LOC102725191A0A1B0GVB3 256 aa12.79□□□□□ -0.36
SF3B1-204ENST00000414963 A0A1W2PNR3 127 aa12.79□□□□□ -0.36
SF3B1-204ENST00000414963 ZAR1LA6NP61 321 aa12.79□□□□□ -0.36
SF3B1-204ENST00000414963 SULT2B1O00204 365 aa12.79□□□□□ -0.36
SF3B1-204ENST00000414963 PLPP3O14495 311 aa12.79□□□□□ -0.36
SF3B1-204ENST00000414963 EIF1BO60739 113 aaKnown RBP12.79□□□□□ -0.36
SF3B1-204ENST00000414963 OPN1LWP04000 364 aa12.79□□□□□ -0.36
SF3B1-204ENST00000414963 EPHA2P29317 976 aa12.79□□□□□ -0.36
SF3B1-204ENST00000414963 GRPRP30550 384 aa12.79□□□□□ -0.36
SF3B1-204ENST00000414963 GIPRP48546 466 aa12.79□□□□□ -0.36
SF3B1-204ENST00000414963 STARP49675 285 aa12.79□□□□□ -0.36
SF3B1-204ENST00000414963 SUCLG1P53597 346 aaKnown RBP12.79□□□□□ -0.36
SF3B1-204ENST00000414963 NUP107P57740 925 aa12.79□□□□□ -0.36
SF3B1-204ENST00000414963 CSNK2A1P68400 391 aaPredicted RBP12.79□□□□□ -0.36
SF3B1-204ENST00000414963 CDK5Q00535 292 aa12.79□□□□□ -0.36
SF3B1-204ENST00000414963 IL1RL1Q01638 556 aa12.79□□□□□ -0.36
SF3B1-204ENST00000414963 C19orf57Q0VDD7 668 aa12.79□□□□□ -0.36
SF3B1-204ENST00000414963 ZP4Q12836 540 aa12.79□□□□□ -0.36
SF3B1-204ENST00000414963 KLRB1Q12918 225 aa12.79□□□□□ -0.36
SF3B1-204ENST00000414963 TAF11Q15544 211 aa12.79□□□□□ -0.36
SF3B1-204ENST00000414963 OR7A5Q15622 319 aa12.79□□□□□ -0.36
SF3B1-204ENST00000414963 KRTCAP3Q53RY4 240 aa12.79□□□□□ -0.36
SF3B1-204ENST00000414963 PDSS1Q5T2R2 415 aa12.79□□□□□ -0.36
SF3B1-204ENST00000414963 TTC23Q5W5X9 447 aa12.79□□□□□ -0.36
SF3B1-204ENST00000414963 H1FNTQ75WM6 255 aaPredicted RBP12.79□□□□□ -0.36
SF3B1-204ENST00000414963 TEX19Q8NA77 164 aa12.79□□□□□ -0.36
SF3B1-204ENST00000414963 OR51A7Q8NH64 312 aa12.79□□□□□ -0.36
SF3B1-204ENST00000414963 OR2V1Q8NHB1 315 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms