RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 PRRG3Q9BZD7 231 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 ZNF696Q9H7X3 374 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 C12orf10Q9HB07 376 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 SERINC1Q9NRX5 453 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 CLN6Q9NWW5 311 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 TUBA8Q9NY65 449 aaPredicted RBP3.35□□□□□ -1.87
RTN4-208ENST00000404909 BLOC1S6Q9UL45 172 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 ADAM18Q9Y3Q7 739 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 IGLV3-32A0A0A0MS00 114 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 A0A1W2PNR3 127 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 ANKRD33BA6NCL7 494 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 OR5H15A6NDH6 313 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 MCIDASD6RGH6 385 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 EFNA2O43921 213 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 MPZL2O60487 215 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 NDUFB2O95178 105 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 OR6A2O95222 327 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 PLGP00747 810 aaPredicted RBP3.35□□□□□ -1.87
RTN4-208ENST00000404909 ADORA3P0DMS8 318 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 GDF1P27539 372 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 GRPRP30550 384 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 SLC6A6P31641 620 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 SLC16A1P53985 500 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 DSCR4P56555 118 aaPredicted RBP3.35□□□□□ -1.87
RTN4-208ENST00000404909 C19orf57Q0VDD7 668 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 TOP3AQ13472 1001 aaPredicted RBP3.35□□□□□ -1.87
RTN4-208ENST00000404909 BLMHQ13867 455 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 ZNF800Q2TB10 664 aaPredicted RBP eCLIP3.35□□□□□ -1.875e-18■□□□□ 10.6
RTN4-208ENST00000404909 SYT14P1Q58G82 188 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 ALG10Q5BKT4 473 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 RBM48Q5RL73 367 aaKnown RBP3.35□□□□□ -1.87
RTN4-208ENST00000404909 FAM69AQ5T7M9 428 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 C12orf73Q69YU5 71 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 RPL13AP3Q6NVV1 102 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 SULF2Q8IWU5 870 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 KDM8Q8N371 416 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 CYB561A3Q8NBI2 242 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 OR4K13Q8NH42 304 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 POC1BQ8TC44 478 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 OR5B2Q96R09 309 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 KATNB1Q9BVA0 655 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 ZNF552Q9H707 407 aaPredicted RBP3.35□□□□□ -1.87
RTN4-208ENST00000404909 TPRKBQ9Y3C4 175 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 CSAG2Q9Y5P2 127 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 IER3IP1Q9Y5U9 82 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 CACNA1CQ13936 2221 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 CACNA1AO00555 2505 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 A0A087WXM4 84 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 RIIAD1A6NNX1 92 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 FAM166BA8MTA8 275 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 E9PQ18 207 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 M0R082 166 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 BHLHE40O14503 412 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 RNF13O43567 381 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 ZIC3O60481 467 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 TRIM3O75382 744 aaPredicted RBP3.35□□□□□ -1.87
RTN4-208ENST00000404909 APOL3O95236 402 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 HMGN1P05114 100 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 SMIM18P0DKX4 95 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 CD46P15529 392 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 GABRB1P18505 474 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 CNR1P21554 472 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 EIF2S3P41091 472 aaKnown RBP3.35□□□□□ -1.87
RTN4-208ENST00000404909 EIF1P41567 113 aaKnown RBP3.35□□□□□ -1.87
RTN4-208ENST00000404909 CTXN1P60606 82 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 PRPS1P60891 318 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 RPS7P62081 194 aaKnown RBP3.35□□□□□ -1.87
RTN4-208ENST00000404909 FOXK2Q01167 660 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 PLGLB1Q02325 96 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 RPL18Q07020 188 aaKnown RBP3.35□□□□□ -1.87
RTN4-208ENST00000404909 MYBPHQ13203 477 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 PMS2P3Q13401 168 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 FHL1Q13642 323 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 NEDD8Q15843 81 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 KCTD21Q4G0X4 260 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 C3orf33Q6P1S2 294 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 PLBD1Q6P4A8 553 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 TMEM81Q6P7N7 255 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 B3GLCTQ6Y288 498 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 CCDC81Q6ZN84 652 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 MAMDC2Q7Z304 686 aaPredicted RBP3.35□□□□□ -1.87
RTN4-208ENST00000404909 GPALPP1Q8IXQ4 340 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 UBQLNLQ8IYU4 475 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 FAM98AQ8NCA5 519 aaKnown RBP3.35□□□□□ -1.87
RTN4-208ENST00000404909 BBS1Q8NFJ9 593 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 ZNF417Q8TAU3 575 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 TMEM163Q8TC26 289 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 FBLIM1Q8WUP2 373 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 TRUB1Q8WWH5 349 aaKnown RBP3.35□□□□□ -1.87
RTN4-208ENST00000404909 ZBTB8AQ96BR9 441 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 TMEM41AQ96HV5 264 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 C5orf34Q96MH7 638 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 ZNF587Q96SQ5 575 aaPredicted RBP3.35□□□□□ -1.87
RTN4-208ENST00000404909 PTDSS2Q9BVG9 487 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 TAPBPLQ9BX59 468 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 POLDIP3Q9BY77 421 aaKnown RBP3.35□□□□□ -1.87
RTN4-208ENST00000404909 MED20Q9H944 212 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 SLC25A19Q9HC21 320 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 ZFP64Q9NPA5 681 aa3.35□□□□□ -1.87
RTN4-208ENST00000404909 PAK1IP1Q9NWT1 392 aaPredicted RBP3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms