RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 LRFN4Q6PJG9 635 aa14.89□□□□□ -0.03
PCDH1-203ENST00000394536 CMTM4Q8IZR5 234 aa14.89□□□□□ -0.03
PCDH1-203ENST00000394536 NKX3-1Q99801 234 aaPredicted RBP14.89□□□□□ -0.03
PCDH1-203ENST00000394536 TSPAN10Q9H1Z9 355 aaPredicted RBP14.89□□□□□ -0.03
PCDH1-203ENST00000394536 ELL3Q9HB65 397 aaPredicted RBP14.89□□□□□ -0.03
PCDH1-203ENST00000394536 INPP5EQ9NRR6 644 aa14.89□□□□□ -0.03
PCDH1-203ENST00000394536 B3GNT2Q9NY97 397 aa14.89□□□□□ -0.03
PCDH1-203ENST00000394536 ATXN7L1Q9ULK2 861 aaPredicted RBP14.89□□□□□ -0.03
PCDH1-203ENST00000394536 DCDC2BA2VCK2 349 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 PLATP00750 562 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 NTSR1P30989 418 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 GPR18Q14330 331 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 ZBTB37Q5TC79 503 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 OR4N2Q8NGD1 307 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 PTP4A1Q93096 173 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 SLC38A3Q99624 504 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 TRPV4Q9HBA0 871 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 NRIP3Q9NQ35 241 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 THAP10Q9P2Z0 257 aaPredicted RBP14.88□□□□□ -0.03
PCDH1-203ENST00000394536 FBXL21Q9UKT6 434 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 GOSR2O14653 212 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 OR2T7P0C7T2 308 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 EXOSC2Q13868 293 aaKnown RBP14.88□□□□□ -0.03
PCDH1-203ENST00000394536 CD276Q5ZPR3 534 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 ELP2Q6IA86 826 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 SLC35D2Q76EJ3 337 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 OR2T27Q8NH04 317 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 ASB16Q96NS5 453 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 CMKLR1Q99788 373 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 ZMAT3Q9HA38 289 aaKnown RBP14.88□□□□□ -0.03
PCDH1-203ENST00000394536 CAMK2AQ9UQM7 478 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 SF3B6Q9Y3B4 125 aaKnown RBP14.88□□□□□ -0.03
PCDH1-203ENST00000394536 BRWD1Q9NSI6 2320 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 IGKV1-8A0A0C4DH67 115 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 CDC14CA4D256 554 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 TBX19O60806 448 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 ATP1B1P05026 303 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 MAPK3P27361 379 aaPredicted RBP14.88□□□□□ -0.03
PCDH1-203ENST00000394536 SLC6A1P30531 599 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 NKPD1Q17RQ9 610 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 ARHGAP11BQ3KRB8 267 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 ALG10Q5BKT4 473 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 RPL22L1Q6P5R6 122 aaKnown RBP14.88□□□□□ -0.03
PCDH1-203ENST00000394536 DPY19L4Q7Z388 723 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 LNX2Q8N448 690 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 IL17RCQ8NAC3 791 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 TBL1XR1Q9BZK7 514 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 TMEM185BQ9H7F4 350 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 EMC7Q9NPA0 242 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 COPS3Q9UNS2 423 aa14.88□□□□□ -0.03
PCDH1-203ENST00000394536 A0A1W2PPL8 197 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 GPR171O14626 319 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 LILRB3O75022 631 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 PPM1BO75688 479 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 TBX6O95947 436 aaPredicted RBP14.87□□□□□ -0.03
PCDH1-203ENST00000394536 AK1P00568 194 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 EPXP11678 715 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 POU3F3P20264 500 aaPredicted RBP14.87□□□□□ -0.03
PCDH1-203ENST00000394536 IL12BP29460 328 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 DUSP8Q13202 625 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 MLC1Q15049 377 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 COL28A1Q2UY09 1125 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 PRAMEF8Q5VWM4 474 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 PRAMEF7Q5VXH5 474 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 KCTD9Q7L273 389 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 SFXN2Q96NB2 322 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 ELF4Q99607 663 aaPredicted RBP14.87□□□□□ -0.03
PCDH1-203ENST00000394536 ALG12Q9BV10 488 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 BRCA2P51587 3418 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 WNT1P04628 370 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 PTBP1P26599 531 aaKnown RBP eCLIP14.87□□□□□ -0.03
PCDH1-203ENST00000394536 HTR4Q13639 388 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 GRM7Q14831 915 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 AGBL4Q5VU57 503 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 TEX261Q6UWH6 196 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 FAM3CQ92520 227 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 DVL3Q92997 716 aaPredicted RBP14.87□□□□□ -0.03
PCDH1-203ENST00000394536 ZNF471Q9BX82 626 aaPredicted RBP14.87□□□□□ -0.03
PCDH1-203ENST00000394536 NCDNQ9UBB6 729 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 ZNF281Q9Y2X9 895 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 U3KQ87 197 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 C13orf42A0A1B0GVH6 325 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 SOX1O00570 391 aaPredicted RBP14.87□□□□□ -0.03
PCDH1-203ENST00000394536 DNAJB6O75190 326 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 RNH1P13489 461 aaKnown RBP14.87□□□□□ -0.03
PCDH1-203ENST00000394536 SRSF5Q13243 272 aaKnown RBP14.87□□□□□ -0.03
PCDH1-203ENST00000394536 KIR2DS3Q14952 304 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 ST3GAL2Q16842 350 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 KLHL26Q53HC5 615 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 BEX5Q5H9J7 111 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 LSM14AQ8ND56 463 aaKnown RBP14.87□□□□□ -0.03
PCDH1-203ENST00000394536 TMEM106AQ96A25 262 aa14.87□□□□□ -0.03
PCDH1-203ENST00000394536 ZNF436Q9C0F3 470 aaPredicted RBP14.87□□□□□ -0.03
PCDH1-203ENST00000394536 C5orf51A6NDU8 294 aa14.86□□□□□ -0.03
PCDH1-203ENST00000394536 RGS11O94810 467 aa14.86□□□□□ -0.03
PCDH1-203ENST00000394536 TNFP01375 233 aa14.86□□□□□ -0.03
PCDH1-203ENST00000394536 TP53P04637 393 aaPredicted RBP14.86□□□□□ -0.03
PCDH1-203ENST00000394536 ZNF823P16415 610 aa14.86□□□□□ -0.03
PCDH1-203ENST00000394536 DRD3P35462 400 aa14.86□□□□□ -0.03
PCDH1-203ENST00000394536 RAD52P43351 418 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms