RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 UGT1A9O60656 530 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 SNX4O95219 450 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 OXSR1O95747 527 aaPredicted RBP1.45□□□□□ -2.18
VPS13A-206ENST00000376646 LGI1O95970 557 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 SERPINA3P01011 423 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 NPR2P20594 1047 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 SHMT2P34897 504 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 KLK7P49862 253 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 RIPPLY3P57055 190 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 CSNK1G2P78368 415 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 CDK16Q00536 496 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 PLD1Q13393 1074 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 DUSP7Q16829 419 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 BCL7AQ4VC05 210 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 OR52E8Q6IFG1 317 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 HSDL2Q6YN16 418 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 NBPF5PQ86XG9 351 aaPredicted RBP1.45□□□□□ -2.18
VPS13A-206ENST00000376646 ECHDC2Q86YB7 292 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 FTMTQ8N4E7 242 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 BBS1Q8NFJ9 593 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 OR2AP1Q8NGE2 309 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 OR9A1PQ8NGU1 263 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 LINC01006Q8NI28 216 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 MAGEE2Q8TD90 523 aaPredicted RBP1.45□□□□□ -2.18
VPS13A-206ENST00000376646 CHCHD10Q8WYQ3 142 aaPredicted RBP1.45□□□□□ -2.18
VPS13A-206ENST00000376646 CXorf40BQ96DE9 158 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 CMTM7Q96FZ5 175 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 SEC22AQ96IW7 307 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 TECTBQ96PL2 329 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 PLEKHF1Q96S99 279 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 ARHGDIGQ99819 225 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 TRIM62Q9BVG3 475 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 SUDS3Q9H7L9 328 aaPredicted RBP1.45□□□□□ -2.18
VPS13A-206ENST00000376646 NHEJ1Q9H9Q4 299 aaPredicted RBP1.45□□□□□ -2.18
VPS13A-206ENST00000376646 BFARQ9NZS9 450 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 SEC14L3Q9UDX4 400 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 DCDC2Q9UHG0 476 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 KIF25Q9UIL4 384 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 TRAF3IP3Q9Y228 551 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 PIGLQ9Y2B2 252 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 V9GY05 133 aa1.45□□□□□ -2.18
VPS13A-206ENST00000376646 THSD7BQ9C0I4 1608 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 A6NIZ1 184 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 TRIM64CA6NLI5 447 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 PANO1I0J062 215 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 TSPAN12O95859 305 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 HOXC4P09017 264 aaPredicted RBP1.44□□□□□ -2.18
VPS13A-206ENST00000376646 RFC4P35249 363 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 UGT1A5P35504 534 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 DDOSTP39656 456 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 RAP1BP61224 184 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 TGFBR3Q03167 851 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 BST1Q10588 318 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 HERPUD1Q15011 391 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 OXA1LQ15070 435 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 KLHL38Q2WGJ6 581 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 KCTD21Q4G0X4 260 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 FILIP1LQ4L180 1135 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 BOLA3Q53S33 107 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 CARD16Q5EG05 197 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 KLF17Q5JT82 389 aaPredicted RBP1.44□□□□□ -2.18
VPS13A-206ENST00000376646 SCARA5Q6ZMJ2 495 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 ZNF571Q7Z3V5 609 aaPredicted RBP1.44□□□□□ -2.18
VPS13A-206ENST00000376646 ZNF740Q8NDX6 193 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 OR1E3Q8WZA6 343 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 UFD1Q92890 307 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 PAGE5Q96GU1 130 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 OXGR1Q96P68 337 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 FMO2Q99518 471 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 EBF4Q9BQW3 602 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 MRPL45Q9BRJ2 306 aaKnown RBP1.44□□□□□ -2.18
VPS13A-206ENST00000376646 SLC39A3Q9BRY0 314 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 NAT9Q9BTE0 207 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 POLR2J2Q9GZM3 115 aaKnown RBP1.44□□□□□ -2.18
VPS13A-206ENST00000376646 ACTR6Q9GZN1 396 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 POLR2J3Q9H1A7 115 aaKnown RBP1.44□□□□□ -2.18
VPS13A-206ENST00000376646 OR51J1Q9H342 316 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 RNF167Q9H6Y7 350 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 FOLH1BQ9HBA9 442 aa1.44□□□□□ -2.18
VPS13A-206ENST00000376646 RPL36Q9Y3U8 105 aaKnown RBP1.44□□□□□ -2.18
VPS13A-206ENST00000376646 IGHV1OR21-1A0A087WYE8 117 aa1.43□□□□□ -2.18
VPS13A-206ENST00000376646 NSG1A0A0A6YYJ2 146 aa1.43□□□□□ -2.18
VPS13A-206ENST00000376646 FAM231BA6NCW3 169 aa1.43□□□□□ -2.18
VPS13A-206ENST00000376646 OR52A4PA6NMU1 304 aa1.43□□□□□ -2.18
VPS13A-206ENST00000376646 UBXN8O00124 270 aa1.43□□□□□ -2.18
VPS13A-206ENST00000376646 HSD17B6O14756 317 aa1.43□□□□□ -2.18
VPS13A-206ENST00000376646 PALMO75781 387 aa1.43□□□□□ -2.18
VPS13A-206ENST00000376646 SNAPINO95295 136 aa1.43□□□□□ -2.18
VPS13A-206ENST00000376646 KLK3P07288 261 aaPredicted RBP1.43□□□□□ -2.18
VPS13A-206ENST00000376646 ETS2P15036 469 aa1.43□□□□□ -2.18
VPS13A-206ENST00000376646 NCF2P19878 526 aaPredicted RBP1.43□□□□□ -2.18
VPS13A-206ENST00000376646 CXCR2P25025 360 aa1.43□□□□□ -2.18
VPS13A-206ENST00000376646 SULT1E1P49888 294 aa1.43□□□□□ -2.18
VPS13A-206ENST00000376646 CAV2P51636 162 aa1.43□□□□□ -2.18
VPS13A-206ENST00000376646 GPM6AP51674 278 aa1.43□□□□□ -2.18
VPS13A-206ENST00000376646 ZNF133P52736 654 aaPredicted RBP1.43□□□□□ -2.18
VPS13A-206ENST00000376646 APOC4P55056 127 aa1.43□□□□□ -2.18
VPS13A-206ENST00000376646 UCNP55089 124 aa1.43□□□□□ -2.18
VPS13A-206ENST00000376646 SELENOTP62341 195 aa1.43□□□□□ -2.18
VPS13A-206ENST00000376646 IMMTQ16891 758 aaKnown RBP1.43□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms